Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5244

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5243: 13611 - KOG1601 GATA-4/5/6 transcription factors, at 247199 to 251043 13611 mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251965 to 253364 13612 mRNA_5245: 13613 - KOG2887 Membrane protein involved in ER to Golgi transport, at 253942 to 254889 13613

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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251,028 - -0.8
251,062 - -0.4
251,190 - -0.4
251,197 - -0.7
251,216 - -1.2
251,218 + -0.7
251,225 - -0.7
251,231 + -2.8
251,233 - 1.4
251,241 + -1.5
251,351 + -1.5
251,354 - 0.5
251,356 - -2.1
251,356 - -1.7
251,365 - -1.0
251,366 + -1.4
251,368 + 1.7
251,369 - -0.7
251,372 + -0.1
251,372 - -2.1
251,373 + -1.4
251,375 - -0.7
251,388 + 0.1
251,392 + -1.4
251,397 - -2.3
251,412 - -1.7
251,414 + -1.5
251,421 - -2.1
251,423 - -2.9
251,425 + -2.2
251,528 + -2.8
251,535 + -0.9
251,537 - -0.4
251,553 + -0.8
251,560 - -0.8
251,561 - -0.1
251,681 + -0.1
251,685 + -2.0
251,702 + -1.9
251,719 + -0.4
251,753 + -0.8
251,755 - -1.4
251,810 - -1.1
251,827 - -0.7
251,835 + -4.0
252,107 - 13612 mRNA_5244 0.10 -2.7
252,377 - 13612 mRNA_5244 0.29 -1.6
252,441 + 13612 mRNA_5244 0.34 -1.9
253,002 + 13612 mRNA_5244 0.74 -0.6
253,161 - 13612 mRNA_5244 0.85 -0.9
253,414 - -2.3
253,714 - -1.2
253,727 - -0.8
253,749 - 0.7
253,890 + -1.4
254,028 + -0.6