Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5239

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5238: 13606 - KOG1199 Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase, at 235141 to 236473 13606 mRNA_5239: 13607 - K10859 ALKBH2 alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, at 236624 to 237646 13607 mRNA_5240: 13608 - HMMPfam-Ubiquinol-cytochrome-c reductase complex subunit (QCR10)-PF09796, at 238020 to 238702 13608

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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235,710 - 13606 mRNA_5238 0.43 -0.5
235,785 - 13606 mRNA_5238 0.48 -1.3
236,125 + 13606 mRNA_5238 0.74 -0.6
236,295 + 13606 mRNA_5238 0.87 -0.6
236,453 + -1.2
236,630 - -2.4
236,723 - -2.9
236,734 + 13607 mRNA_5239 0.11 -0.2
236,743 + 13607 mRNA_5239 0.12 -1.3
236,873 - 13607 mRNA_5239 0.24 -2.7
237,009 - 13607 mRNA_5239 0.38 -2.3
237,342 + 13607 mRNA_5239 0.70 -0.7
237,776 - -1.3
237,785 - -0.1
237,799 - -1.8
237,907 + 0.1
238,003 + -2.8
238,018 - -1.5
238,068 - -2.5
238,073 - 0.7
238,221 + 13608 mRNA_5240 0.29 -1.2
238,228 - 13608 mRNA_5240 0.30 -2.0
238,509 - 13608 mRNA_5240 0.72 -1.5
238,527 + 13608 mRNA_5240 0.74 -2.6