Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5238

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5237: 13605 - K02914 RP-L34, MRPL34, rpmH large subunit ribosomal protein L34, at 234183 to 234602 13605 mRNA_5238: 13606 - KOG1199 Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase, at 235141 to 236473 13606 mRNA_5239: 13607 - K10859 ALKBH2 alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, at 236624 to 237646 13607

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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234,781 + -1.0
234,821 - -0.6
234,822 - -0.6
235,389 - 13606 mRNA_5238 0.19 -1.2
235,564 + 13606 mRNA_5238 0.32 -1.7
235,710 - 13606 mRNA_5238 0.43 -0.5
235,785 - 13606 mRNA_5238 0.48 -1.3
236,125 + 13606 mRNA_5238 0.74 -0.6
236,295 + 13606 mRNA_5238 0.87 -0.6
236,453 + -1.2
236,630 - -2.4
236,723 - -2.9
236,734 + 13607 mRNA_5239 0.11 -0.2
236,743 + 13607 mRNA_5239 0.12 -1.3
236,873 - 13607 mRNA_5239 0.24 -2.7
237,009 - 13607 mRNA_5239 0.38 -2.3
237,342 + 13607 mRNA_5239 0.70 -0.7