Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5234

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5233: 13601 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 221714 to 224141 13601 mRNA_5234: 13602 - KOG0725 Reductases with broad range of substrate specificities, at 224900 to 226337 13602 mRNA_5235: 13603 - KOG1178 Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes, at 226852 to 231804 13603

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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224,559 - -1.4
224,588 - -3.1
224,730 - -1.2
224,754 - -0.3
224,768 - -3.9
224,771 + -2.5
224,812 - 0.3
224,904 + -2.7
225,024 + -0.5
225,038 + -0.8
225,102 + 13602 mRNA_5234 0.14 -1.7
225,629 + 13602 mRNA_5234 0.51 0.3
225,753 + 13602 mRNA_5234 0.59 0.2
226,489 - -0.5
226,506 + -0.8
226,520 - -2.5
226,544 + -2.7
226,576 + -1.9
226,578 + -0.6
226,579 - -3.1
226,656 + -0.4
226,662 - -0.3
226,666 - -3.3
226,757 - 2.1
226,767 - -2.9
226,784 - -3.3
226,785 - -1.5
226,805 - -1.8
226,913 + -0.4
227,077 + -1.4
227,103 + -0.8
227,225 + 1.0