Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5233

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218691 to 220745 13600 mRNA_5233: 13601 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 221714 to 224141 13601 mRNA_5234: 13602 - KOG0725 Reductases with broad range of substrate specificities, at 224900 to 226337 13602

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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220,761 + -1.1
220,803 + -1.4
220,809 + -3.8
220,811 - -0.8
220,937 - -3.9
220,942 - 0.2
220,948 + 0.6
220,965 - -0.4
220,965 + 1.1
220,991 + -1.3
220,993 - -0.3
221,027 + -0.7
221,043 - 1.4
221,044 + -0.7
221,062 - 0.3
221,062 - -0.9
221,064 - -0.2
221,072 - -0.3
221,075 - -0.4
221,081 - -2.2
221,094 + 0.1
221,100 - -3.4
221,101 + -3.2
221,102 - 0.3
221,103 + -1.4
221,105 + -0.7
221,106 - 0.4
221,107 + -2.7
221,123 + -2.1
221,136 + -1.9
221,145 - -2.0
221,146 + -3.7
221,152 + -2.3
221,171 + -1.1
221,179 + 0.1
221,191 - -1.2
221,203 - -1.6
221,204 - -1.8
221,217 + -2.1
221,217 - -0.7
221,219 - -0.4
221,249 + -1.7
221,253 - -1.4
221,253 - -1.3
221,295 + -3.2
221,310 - -1.8
221,318 + -1.1
221,350 + -0.4
221,362 + -1.7
221,368 - -3.1
221,370 + 0.2
221,380 + -0.6
221,381 + -2.9
221,396 + -1.0
221,398 - -1.6
221,398 + 1.2
221,405 + -0.5
221,405 + -4.1
221,411 - -1.8
221,411 + -1.4
221,411 - -1.2
221,412 - -1.0
221,415 + -2.4
221,419 + -3.7
221,419 + -0.5
221,431 + -1.3
221,460 + -3.2
221,465 - -0.5
221,477 - -1.7
221,501 + -2.7
221,508 - -3.7
221,530 + 1.0
221,535 - -0.7
221,535 + 1.2
221,540 - -0.8
221,540 + -2.2
221,540 + -2.0
221,547 + -2.4
221,548 + -1.5
221,552 - -2.4
221,552 + -1.6
221,555 - -2.0
221,555 - -1.9
221,558 + -0.5
221,683 + -1.8
221,707 + -0.4
221,710 + -2.1
221,747 - -2.6
221,805 - 0.4
221,838 - 0.6
221,843 + -0.1
221,850 - -1.8
221,948 - -1.6
222,601 - 13601 mRNA_5233 0.37 -0.4
222,723 - 13601 mRNA_5233 0.42 -0.2
222,877 - 13601 mRNA_5233 0.48 -1.0
223,488 + 13601 mRNA_5233 0.73 -1.8
224,559 - -1.4
224,588 - -3.1
224,730 - -1.2
224,754 - -0.3
224,768 - -3.9
224,771 + -2.5
224,812 - 0.3
224,904 + -2.7
225,024 + -0.5
225,038 + -0.8
225,102 + 13602 mRNA_5234 0.14 -1.7