Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5223

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5222: 13590 - Hypothetical Protein, at 187738 to 188641 13590 mRNA_5223: 13591 - Hypothetical Protein, at 189064 to 190572 13591 mRNA_5224: 13592 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 190897 to 192363 13592

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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188,189 + 13590 mRNA_5222 0.50 -1.3
188,435 + 13590 mRNA_5222 0.77 -3.4
188,604 - -0.3
188,663 + 1.4
188,901 + 0.1
188,973 - -2.9
189,016 - -0.2
189,038 + -1.4
189,041 + -1.3
189,046 - -0.9
189,048 + -1.0
189,227 + 13591 mRNA_5223 0.11 -1.5
189,379 + 13591 mRNA_5223 0.21 0.4
189,453 - 13591 mRNA_5223 0.26 -0.9
189,475 - 13591 mRNA_5223 0.27 -2.8
189,490 + 13591 mRNA_5223 0.28 -2.0
189,620 - 13591 mRNA_5223 0.37 0.1
189,721 + 13591 mRNA_5223 0.44 -2.6
189,759 - 13591 mRNA_5223 0.46 0.9
189,871 + 13591 mRNA_5223 0.53 -0.2
189,876 - 13591 mRNA_5223 0.54 0.3
189,892 - 13591 mRNA_5223 0.55 0.2
189,895 + 13591 mRNA_5223 0.55 -0.5
190,047 - 13591 mRNA_5223 0.65 -2.6
190,069 + 13591 mRNA_5223 0.67 -0.7
190,327 - 13591 mRNA_5223 0.84 0.5
190,343 + 13591 mRNA_5223 0.85 -2.2
190,385 - 13591 mRNA_5223 0.88 -1.2
190,385 - 13591 mRNA_5223 0.88 -1.9
190,403 - 13591 mRNA_5223 0.89 -1.2
190,765 - -1.9
190,771 - -1.1
190,781 - -2.5
190,879 + -1.0
190,941 - -0.4
190,943 + 1.0
190,960 + -2.8
191,055 + 13592 mRNA_5224 0.11 -0.2
191,086 + 13592 mRNA_5224 0.13 -0.1
191,096 - 13592 mRNA_5224 0.14 -2.3
191,104 - 13592 mRNA_5224 0.14 -1.6
191,117 + 13592 mRNA_5224 0.15 -1.3
191,197 + 13592 mRNA_5224 0.20 -4.2
191,232 - 13592 mRNA_5224 0.23 -0.8
191,266 + 13592 mRNA_5224 0.25 0.3
191,282 + 13592 mRNA_5224 0.26 -0.8