Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5218

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5216: 13584 - K04648 DCTN1 dynactin 1, at 169213 to 174465 13584 mRNA_5218: 13586 - HMMPfam-RNA12 protein-PF10443,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF54928, at 174597 to 177713 13586 mRNA_5219: 13587 - Hypothetical Protein, at 177901 to 180149 13587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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174,502 + -0.7
174,503 - -0.6
174,517 + -0.4
174,560 - -1.0
174,565 + -1.0
174,566 + -2.6
174,577 + -2.3
174,601 - 0.1
174,700 + 0.4
174,734 - -3.0
175,148 - 13586 mRNA_5218 0.18 -1.4
175,286 + 13586 mRNA_5218 0.22 -1.0
175,593 - 13586 mRNA_5218 0.32 -1.2
175,593 + 13586 mRNA_5218 0.32 -2.3
176,005 - 13586 mRNA_5218 0.45 -0.6
176,294 + 13586 mRNA_5218 0.54 -0.5
176,410 - 13586 mRNA_5218 0.58 -0.9
176,507 + 13586 mRNA_5218 0.61 -0.4
176,754 - 13586 mRNA_5218 0.69 -1.3
177,168 - 13586 mRNA_5218 0.82 -1.3
177,366 + 13586 mRNA_5218 0.89 -1.1
177,462 + 0.2
177,502 + 0.5
177,521 + -0.0
177,563 - -1.2
177,578 + -0.0
177,603 + 1.3
177,609 - -1.7
177,615 - -1.0
177,728 + -0.5
177,737 - -2.0
177,747 + -1.8
177,750 - -5.1
177,760 + -0.6
177,766 - -2.8
177,775 - -1.8
177,785 - -1.2
177,818 - -2.0
177,840 + -0.9
177,860 + 0.5
177,864 - 0.1
177,978 - 0.4
177,986 + 0.1
178,001 + -2.7
178,071 - -1.4
178,112 - -2.2
178,124 - -2.8
178,132 + 13587 mRNA_5219 0.10 -0.9
178,244 - 13587 mRNA_5219 0.15 -3.4
178,307 - 13587 mRNA_5219 0.18 -0.1
178,408 + 13587 mRNA_5219 0.23 -1.2
178,422 + 13587 mRNA_5219 0.23 0.1
178,439 - 13587 mRNA_5219 0.24 -0.8
178,567 - 13587 mRNA_5219 0.30 -1.5