Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5213

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5212: 13580 - K00624 E2.3.1.7 carnitine O-acetyltransferase, at 159635 to 162568 13580 mRNA_5213: 13581 - Hypothetical Protein, at 163193 to 164200 13581 mRNA_5214: 13582 - K03845 ALG3 alpha-1,3-mannosyltransferase, at 164395 to 166467 13582

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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162,534 - -2.1
162,659 + -1.7
162,665 - -1.5
162,667 + -1.4
162,673 - -2.2
162,673 + -0.0
162,673 + -1.7
162,684 - -0.8
162,686 + -2.4
162,688 + -3.1
162,690 - -1.6
162,709 - -1.1
162,712 + -0.4
162,713 - 0.0
162,713 - -1.8
162,713 + -1.1
162,716 + 0.6
162,718 + 0.5
162,720 + -0.9
162,742 - -1.3
162,748 + -0.3
162,761 - -0.6
162,779 - -2.7
162,782 - -0.7
162,792 - 0.3
162,806 - 1.3
162,807 - 0.8
162,822 + -2.2
162,835 - 0.4
162,863 + -2.0
162,879 + -3.3
162,981 + -0.8
163,070 - -0.8
163,385 + 13581 mRNA_5213 0.19 0.2
163,453 - 13581 mRNA_5213 0.26 -2.3
163,668 + 13581 mRNA_5213 0.47 -1.1
163,734 + 13581 mRNA_5213 0.54 -2.7
163,948 + 13581 mRNA_5213 0.75 -1.0
163,995 + 13581 mRNA_5213 0.80 -2.7
164,058 + 13581 mRNA_5213 0.86 -2.0
164,492 - -2.0
164,788 + 13582 mRNA_5214 0.19 -0.5
164,857 - 13582 mRNA_5214 0.22 -1.8
164,941 - 13582 mRNA_5214 0.26 -0.8
164,967 - 13582 mRNA_5214 0.28 -0.8
164,995 + 13582 mRNA_5214 0.29 -2.2