Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5210

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5209: 13577 - K03257 EIF4A translation initiation factor 4A, at 153381 to 155810 13577 mRNA_5210: 13578 - KOG3221 Glycolipid transfer protein, at 156736 to 157976 13578 mRNA_5211: 13579 - BLAST related to UPF0768 protein YBL029C-A [Zygosaccharomyc..., at 158362 to 159031 13579

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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155,951 + -0.9
156,241 - 1.3
156,242 - -2.4
156,374 - -0.8
156,390 + -2.5
156,400 - -1.2
156,638 - -2.4
156,659 - -0.8
156,674 + -0.5
156,682 + -2.3
156,684 - -2.3
156,684 + -2.3
156,689 + -2.2
156,692 - -0.9
156,800 - -0.2
156,823 - -2.5
156,851 - -1.7
156,856 + -1.2
156,858 - 0.7
156,868 + 13578 mRNA_5210 0.11 -2.0
156,991 - 13578 mRNA_5210 0.21 -0.3
156,992 - 13578 mRNA_5210 0.21 -1.4
157,014 - 13578 mRNA_5210 0.22 -1.7
157,279 - 13578 mRNA_5210 0.44 1.3
158,164 + -2.3
158,168 + -1.2
158,282 + 0.3
158,300 + 0.5
158,329 + 0.9
158,446 + 13579 mRNA_5211 0.13 0.6
158,622 - 13579 mRNA_5211 0.39 -1.4
158,736 - 13579 mRNA_5211 0.56 -1.8
158,760 + 13579 mRNA_5211 0.59 -1.5