Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5198

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5197: 13565 - Hypothetical Protein, at 129115 to 130730 13565 mRNA_5198: 13566 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 131412 to 133498 13566 mRNA_5199: 13567 - K01210 E3.2.1.58 glucan 1,3-beta-glucosidase, at 133607 to 137030 13567

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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130,415 - 13565 mRNA_5197 0.80 -2.7
130,804 - -3.2
130,808 + 1.0
130,835 - -0.1
130,950 - -1.5
130,965 - -1.6
131,021 - -1.3
131,100 + -0.2
131,117 + -0.6
131,129 - -0.8
131,138 + 0.0
131,143 - -1.2
131,144 + -2.7
131,149 + -2.7
131,169 + -0.9
131,169 + -1.0
131,182 + -2.7
131,186 + -3.1
131,186 + -0.8
131,187 + -1.0
131,208 + -0.0
131,211 + -1.8
131,217 - -1.4
131,217 - 0.5
131,227 - -1.8
131,227 - -0.8
131,240 + -1.2
131,264 - -0.9
131,275 - -2.3
131,277 + -0.8
131,289 - -1.0
131,307 - -2.2
131,320 + 1.1
131,325 - -1.6
131,356 + -0.1
131,375 - 0.8
131,439 - 1.3
131,442 + -0.1
131,521 + 0.7
131,631 + 13566 mRNA_5198 0.10 -0.7
131,741 + 13566 mRNA_5198 0.16 1.1
131,764 + 13566 mRNA_5198 0.17 -0.7
131,847 - 13566 mRNA_5198 0.21 -3.1
132,120 + 13566 mRNA_5198 0.34 0.7
132,234 - 13566 mRNA_5198 0.39 -0.6
132,289 - 13566 mRNA_5198 0.42 -1.5
132,743 + 13566 mRNA_5198 0.64 -2.8
132,984 - 13566 mRNA_5198 0.75 -0.5
133,143 - 13566 mRNA_5198 0.83 -1.3
133,524 + -2.3
133,552 + -3.0
133,626 - -1.7
133,643 - 1.5
133,665 - 0.3
133,684 - -1.7
133,695 + 0.7
133,736 + -1.4
133,739 + -2.6
133,902 - 0.5
134,473 - 13567 mRNA_5199 0.25 -0.1