Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5194

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119123 to 121882 13561 mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122774 to 124635 13562 mRNA_5195: 13563 - KOG0814 Glyoxylase, at 125333 to 126456 13563

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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121,975 - -0.7
121,978 + -2.6
121,994 - -1.8
122,124 - -0.5
122,163 + 0.0
122,163 + -0.1
122,179 + 0.0
122,191 + -1.8
122,192 + -3.9
122,269 - -0.9
122,274 - -1.6
122,274 - -1.1
122,280 - -0.5
122,280 + 1.0
122,404 - -2.0
122,445 - -2.1
122,468 + -2.7
122,469 - -1.5
122,473 + 1.1
122,474 + -0.0
122,518 - 0.2
122,519 + 0.9
122,546 - -0.9
122,566 - -0.5
122,570 + -2.9
122,572 + -1.7
122,592 - -2.4
122,595 + -0.5
122,601 + -1.0
122,608 - -1.9
122,625 + -1.1
122,757 + -2.7
122,909 + -1.7
122,912 + -0.6
123,451 + 13562 mRNA_5194 0.36 0.4
123,451 - 13562 mRNA_5194 0.36 -2.0
123,658 + 13562 mRNA_5194 0.47 -1.0
124,022 - 13562 mRNA_5194 0.67 0.7
124,022 - 13562 mRNA_5194 0.67 -0.0
124,052 - 13562 mRNA_5194 0.69 -4.2
124,183 + 13562 mRNA_5194 0.76 -1.2
124,241 - 13562 mRNA_5194 0.79 -0.6
124,511 - -1.5
124,556 - -2.7
124,583 - -0.2
124,586 - -0.1
124,591 - -1.0
124,616 + -3.1
124,624 - -3.3
124,645 + -2.3
124,732 - 0.3
124,773 + -2.5
124,775 + -2.1
124,775 + -3.2
124,776 - 0.6
124,781 + -0.2
124,784 - -1.7
124,788 + -0.8
124,798 + -1.2
124,798 + -2.1
124,801 - -2.4
124,803 + -0.5
124,805 - -0.1
124,807 + -3.3
124,812 + 0.1
124,896 + -1.2
124,927 + -0.7
124,941 - -3.0
124,961 - -1.8
124,963 + -1.5
124,968 - -1.5
124,968 + -1.7
124,968 + 1.7
124,970 - -0.9
124,972 + 0.5
124,975 + -1.6
124,983 + -1.2
124,984 + -3.0
125,005 - 0.3
125,016 + -2.8
125,040 - -0.9
125,043 - 0.2
125,050 + 0.4
125,223 + -2.7
125,227 + -0.8