Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5193

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5192: 13560 - KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family), at 117744 to 118664 13560 mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119123 to 121882 13561 mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122774 to 124635 13562

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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118,165 + 13560 mRNA_5192 0.46 -0.6
118,169 + 13560 mRNA_5192 0.46 -1.5
118,730 + -0.6
118,734 - -0.3
120,480 - 13561 mRNA_5193 0.49 -2.5
120,621 + 13561 mRNA_5193 0.54 -3.3
120,630 - 13561 mRNA_5193 0.55 -1.4
120,654 + 13561 mRNA_5193 0.55 -1.4
121,090 - 13561 mRNA_5193 0.71 -0.4
121,230 - 13561 mRNA_5193 0.76 -0.2
121,564 - 13561 mRNA_5193 0.88 -1.4
121,667 + -0.6
121,975 - -0.7
121,978 + -2.6
121,994 - -1.8
122,124 - -0.5
122,163 + 0.0
122,163 + -0.1
122,179 + 0.0
122,191 + -1.8
122,192 + -3.9
122,269 - -0.9
122,274 - -1.6
122,274 - -1.1
122,280 - -0.5
122,280 + 1.0
122,404 - -2.0
122,445 - -2.1
122,468 + -2.7
122,469 - -1.5
122,473 + 1.1
122,474 + -0.0
122,518 - 0.2
122,519 + 0.9
122,546 - -0.9
122,566 - -0.5
122,570 + -2.9
122,572 + -1.7
122,592 - -2.4
122,595 + -0.5
122,601 + -1.0
122,608 - -1.9
122,625 + -1.1
122,757 + -2.7