Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5156

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30718 to 32151 13523 mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32964 to 35897 13524 mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36318 to 38711 13525

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
32,279 - -2.9
32,281 - -0.9
32,367 + -2.7
32,367 + 0.6
32,371 + -3.3
32,375 + -1.0
32,377 - -1.4
32,387 - -2.0
32,387 - -1.0
32,387 - -0.4
32,387 - -0.6
32,395 + -1.7
32,395 + -0.4
32,395 + -1.1
32,395 + -0.2
32,395 + -1.7
32,503 - -1.5
32,554 + -3.0
32,562 + -0.9
32,708 + -1.0
32,710 + -1.6
32,783 + -0.9
32,809 + -0.8
32,835 + -0.7
32,859 + -1.3
32,893 - -3.7
32,898 - -1.6
33,147 - -0.4
33,182 - -0.9
33,268 - 13524 mRNA_5156 0.10 -0.7
33,285 - 13524 mRNA_5156 0.11 -2.4
33,452 - 13524 mRNA_5156 0.17 -1.5
33,461 - 13524 mRNA_5156 0.17 -1.4
33,463 - 13524 mRNA_5156 0.17 -2.9
33,482 + 13524 mRNA_5156 0.18 -1.7
33,508 + 13524 mRNA_5156 0.19 -1.8
33,613 + 13524 mRNA_5156 0.22 0.3
33,869 + 13524 mRNA_5156 0.31 -0.1
33,885 + 13524 mRNA_5156 0.31 -0.3
34,645 - 13524 mRNA_5156 0.57 -0.7
34,665 - 13524 mRNA_5156 0.58 -2.7
34,809 - 13524 mRNA_5156 0.63 -0.1
34,960 - 13524 mRNA_5156 0.68 0.7
34,961 - 13524 mRNA_5156 0.68 -0.9
34,998 + 13524 mRNA_5156 0.69 -2.1
35,406 - 13524 mRNA_5156 0.83 -0.1
35,499 - 13524 mRNA_5156 0.86 -0.6
35,517 + 13524 mRNA_5156 0.87 -3.4
35,667 - -2.0
35,828 - -3.8
35,836 + 0.6
35,981 - -1.8
36,100 + -1.7
36,103 - -2.5
36,108 + 0.5
36,154 - 1.6
36,161 + -4.2
36,296 + -0.5
36,535 - 0.1
36,535 - 0.8
36,579 - 13525 mRNA_5157 0.11 -0.6
36,585 + 13525 mRNA_5157 0.11 -1.3
36,662 + 13525 mRNA_5157 0.14 -3.0
36,693 + 13525 mRNA_5157 0.16 -1.0
36,834 + 13525 mRNA_5157 0.22 -3.6
36,847 + 13525 mRNA_5157 0.22 -1.6