Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5155

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5154: 13522 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SUPERFAMILY--SSF56281, at 28775 to 30256 13522 mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30718 to 32151 13523 mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32964 to 35897 13524

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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29,726 + 13522 mRNA_5154 0.64 0.5
29,881 + 13522 mRNA_5154 0.75 -1.6
30,028 + 13522 mRNA_5154 0.85 -1.6
30,177 + -1.8
30,313 + -0.6
30,512 - -1.5
30,520 - -0.9
30,605 + -4.2
30,735 - -2.5
30,747 + -2.0
30,761 - 0.5
30,794 - -0.8
31,173 - 13523 mRNA_5155 0.32 3.4
31,199 - 13523 mRNA_5155 0.34 -3.8
31,333 + 13523 mRNA_5155 0.43 -2.7
31,339 - 13523 mRNA_5155 0.43 -2.5
31,767 - 13523 mRNA_5155 0.73 -2.3
31,933 + 13523 mRNA_5155 0.85 -0.6
32,279 - -2.9
32,281 - -0.9
32,367 + -2.7
32,367 + 0.6
32,371 + -3.3
32,375 + -1.0
32,377 - -1.4
32,387 - -2.0
32,387 - -1.0
32,387 - -0.4
32,387 - -0.6
32,395 + -1.7
32,395 + -0.4
32,395 + -1.1
32,395 + -0.2
32,395 + -1.7
32,503 - -1.5
32,554 + -3.0
32,562 + -0.9
32,708 + -1.0
32,710 + -1.6
32,783 + -0.9
32,809 + -0.8
32,835 + -0.7
32,859 + -1.3
32,893 - -3.7
32,898 - -1.6
33,147 - -0.4