Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5154

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5153: 13521 - HMMPfam-Secretory lipase-PF03583,PIRSF--PIRSF029171,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF53474, at 26390 to 28027 13521 mRNA_5154: 13522 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SUPERFAMILY--SSF56281, at 28775 to 30256 13522 mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30718 to 32151 13523

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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28,099 + -1.9
28,145 - -0.2
28,145 - -1.8
28,215 - -0.9
28,234 + -0.6
28,261 + -0.7
28,285 - -2.3
28,343 - -1.6
28,366 + -1.4
28,372 - -0.2
28,395 - 0.1
28,414 - -1.0
28,414 + 1.2
28,416 + -2.1
28,427 + -0.5
28,551 + -1.0
28,693 - -1.1
28,730 + -2.2
28,850 - 0.3
28,856 + -0.2
29,009 + 13522 mRNA_5154 0.16 -1.6
29,137 + 13522 mRNA_5154 0.24 0.3
29,189 + 13522 mRNA_5154 0.28 -1.3
29,297 + 13522 mRNA_5154 0.35 -1.0
29,299 + 13522 mRNA_5154 0.35 -0.7
29,481 - 13522 mRNA_5154 0.48 0.2
29,726 + 13522 mRNA_5154 0.64 0.5
29,881 + 13522 mRNA_5154 0.75 -1.6
30,028 + 13522 mRNA_5154 0.85 -1.6
30,177 + -1.8
30,313 + -0.6
30,512 - -1.5
30,520 - -0.9
30,605 + -4.2
30,735 - -2.5
30,747 + -2.0
30,761 - 0.5
30,794 - -0.8
31,173 - 13523 mRNA_5155 0.32 3.4
31,199 - 13523 mRNA_5155 0.34 -3.8