Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5083

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5082: 13450 - K10696 BRE1 E3 ubiquitin-protein ligase BRE1, at 1706172 to 1709244 13450 mRNA_5083: 13451 - Hypothetical Protein, at 1709855 to 1711486 13451 mRNA_5084: 13452 - Hypothetical Protein, at 1712081 to 1713113 13452

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,709,031 + -1.3
1,709,178 + -1.0
1,709,306 + -0.2
1,709,327 - -0.1
1,709,443 - 0.7
1,709,458 - -1.8
1,709,469 - -0.1
1,709,475 + -1.5
1,709,476 + -1.0
1,709,476 + -3.5
1,709,483 + 0.1
1,709,493 + 1.5
1,709,606 - -0.2
1,709,608 - -1.5
1,709,609 - -0.6
1,709,615 + -2.4
1,709,756 - 0.0
1,709,901 - -1.9
1,709,924 + -1.6
1,710,799 + 13451 mRNA_5083 0.58 0.4
1,710,923 + 13451 mRNA_5083 0.65 -1.3
1,710,942 - 13451 mRNA_5083 0.67 -2.7
1,711,091 + 13451 mRNA_5083 0.76 -4.0
1,711,209 - 13451 mRNA_5083 0.83 -2.6
1,711,389 - -0.2
1,711,515 - -0.6
1,711,674 - 0.8
1,711,676 - -2.5
1,711,679 + 0.9
1,711,682 - -1.9
1,711,683 + -0.7
1,711,687 + -2.9
1,711,689 - -1.5
1,711,689 + -3.6
1,711,698 + -0.3
1,711,701 + -1.5
1,711,722 + -2.1
1,711,840 - -2.2
1,711,845 - -0.3
1,711,973 - -3.5
1,712,114 + -0.9
1,712,263 - 13452 mRNA_5084 0.18 -1.0
1,712,420 + 13452 mRNA_5084 0.33 -4.3