Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5047

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5046: 13414 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1630371 to 1631224 13414 mRNA_5047: 13415 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1631648 to 1632435 13415 mRNA_5048: 13416 - HMMPfam-Animal haem peroxidase-PF03098,ProSiteProfiles-Animal heme peroxidase superfamily profile.-PS50292,SUPERFAMILY--SSF48113, at 1632775 to 1633418 13416

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,630,738 - 13414 mRNA_5046 0.43 -1.4
1,630,776 - 13414 mRNA_5046 0.47 -1.5
1,631,040 - 13414 mRNA_5046 0.78 -1.9
1,631,048 + 13414 mRNA_5046 0.79 -1.2
1,631,068 + 13414 mRNA_5046 0.82 -0.7
1,631,155 - -2.1
1,631,174 - -0.9
1,631,204 - -0.5
1,631,495 + -0.1
1,631,603 + -2.1
1,631,903 + 13415 mRNA_5047 0.32 -1.7
1,632,007 - 13415 mRNA_5047 0.46 -5.0
1,632,217 - 13415 mRNA_5047 0.72 -2.3
1,632,339 - 13415 mRNA_5047 0.88 -0.8
1,632,346 - 13415 mRNA_5047 0.89 -0.7
1,632,366 + -1.4
1,632,367 - -0.7
1,632,383 + -1.8
1,632,395 - -1.5
1,632,426 - -2.8
1,632,476 - -2.7
1,632,567 - -2.7
1,632,579 - -1.0
1,632,591 + -1.8
1,632,815 - -1.0
1,632,848 - 13416 mRNA_5048 0.11 0.4
1,632,932 - 13416 mRNA_5048 0.24 -0.9
1,633,130 + 13416 mRNA_5048 0.55 -1.9
1,633,371 - -1.5