Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5024

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5023: 13391 - K17866 DPH2 diphthamide biosynthesis protein 2, at 1572815 to 1575164 13391 mRNA_5024: 13392 - K11124 SMG6, EST1A protein SMG6, at 1575656 to 1580280 13392 mRNA_5025: 13393 - BLAST HECT-type ubiquitin ligase-interacting protein creD [..., at 1580714 to 1583108 13393

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,574,752 - 13391 mRNA_5023 0.82 0.3
1,574,905 - 13391 mRNA_5023 0.89 0.3
1,575,050 - -2.9
1,575,206 + -2.1
1,575,209 - -2.8
1,575,343 - -0.6
1,575,349 + -0.7
1,575,360 - -0.6
1,575,364 - -3.0
1,575,428 - -1.5
1,575,440 + -3.9
1,575,446 - -3.8
1,575,453 - -0.2
1,575,453 + -0.1
1,575,460 - -0.4
1,575,464 - -2.8
1,575,464 + -1.1
1,575,467 - -0.8
1,575,469 + -2.4
1,575,473 + -2.3
1,575,499 - 0.4
1,575,502 + -0.6
1,575,508 + -2.4
1,575,549 + -2.1
1,575,624 - -0.7
1,575,665 + -0.9
1,575,801 + -1.0
1,579,508 - 13392 mRNA_5024 0.83 -2.8
1,579,740 - 13392 mRNA_5024 0.88 -2.8
1,579,947 - -3.0
1,580,265 + -0.1
1,580,551 - -2.7
1,580,827 + -2.8
1,580,855 - -1.1