Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5016

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5015: 13383 - K00925 ackA acetate kinase, at 1553559 to 1555008 13383 mRNA_5016: 13384 - BLAST UPF0643 protein PB2B2.08 [Hypsizygus marmoreus], at 1555727 to 1556735 13384 mRNA_5017: 13385 - K08963 mtnA methylthioribose-1-phosphate isomerase, at 1557007 to 1558590 13385

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,554,906 - -0.2
1,554,940 + -3.0
1,555,038 + -0.8
1,555,080 - -1.7
1,555,086 + -3.8
1,555,235 - -2.2
1,555,270 + -1.1
1,555,516 - 1.0
1,555,780 + -0.7
1,555,816 + -1.1
1,555,818 + -2.1
1,555,820 + -1.3
1,555,947 + 13384 mRNA_5016 0.22 -3.9
1,555,965 + 13384 mRNA_5016 0.24 1.0
1,556,379 - 13384 mRNA_5016 0.65 -3.1
1,556,540 + 13384 mRNA_5016 0.81 -0.9
1,556,548 - 13384 mRNA_5016 0.81 -2.0
1,556,680 - -2.8
1,556,788 - -1.1
1,556,838 + -0.4
1,556,839 - -0.5
1,556,844 + -0.9
1,556,848 - -1.7
1,556,854 + -1.1
1,556,855 - -1.9
1,556,856 + 1.3
1,556,859 - -2.4
1,556,859 - -3.3
1,557,140 - 1.1
1,557,305 - 13385 mRNA_5017 0.19 -2.3
1,557,421 + 13385 mRNA_5017 0.26 -0.6