Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5015

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5014: 13382 - K01621 xfp, xpk xylulose-5-phosphate/fructose-6-phosphate phosphoketolase, at 1549250 to 1553078 13382 mRNA_5015: 13383 - K00925 ackA acetate kinase, at 1553559 to 1555008 13383 mRNA_5016: 13384 - BLAST UPF0643 protein PB2B2.08 [Hypsizygus marmoreus], at 1555727 to 1556735 13384

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,552,690 + 13382 mRNA_5014 0.90 -0.8
1,552,763 - -2.0
1,552,839 - -1.9
1,552,845 + -1.3
1,552,985 - -2.2
1,553,003 + -1.1
1,553,084 - -0.6
1,553,108 + -2.5
1,553,249 + -1.7
1,553,273 + -0.3
1,553,283 - -2.7
1,553,285 + -1.5
1,553,287 + -1.9
1,553,290 - -1.9
1,553,292 - -2.5
1,553,293 - -0.3
1,553,294 + -2.3
1,553,298 + -1.0
1,553,298 + -0.7
1,553,301 - -4.3
1,553,303 - -2.6
1,553,306 + -0.9
1,553,310 + -1.3
1,553,311 + -0.9
1,553,313 + 1.0
1,553,313 - 0.8
1,553,316 - 0.5
1,553,318 - -1.3
1,553,323 + 0.3
1,553,336 + -1.3
1,553,344 + 0.4
1,553,364 - -3.2
1,553,371 + -0.6
1,553,383 - -2.0
1,553,384 + 0.8
1,553,394 + -3.4
1,553,396 - 1.0
1,553,403 + -1.7
1,553,413 + -3.5
1,553,416 - -1.3
1,553,417 + -1.4
1,553,426 - -1.1
1,553,427 + -2.6
1,553,428 - -2.2
1,553,437 + -0.1
1,553,445 + -1.0
1,553,445 + 0.2
1,553,448 + -2.2
1,553,451 + -1.1
1,553,451 - 0.1
1,553,460 + -1.0
1,553,484 + -1.4
1,553,485 - -2.1
1,553,485 - -4.2
1,553,491 - -1.5
1,553,602 - -1.5
1,553,603 + -2.1
1,553,606 - 0.0
1,553,719 + 13383 mRNA_5015 0.11 -1.5
1,553,758 + 13383 mRNA_5015 0.14 -1.5
1,553,772 + 13383 mRNA_5015 0.15 -2.3
1,553,869 + 13383 mRNA_5015 0.21 -2.1
1,554,153 - 13383 mRNA_5015 0.41 -0.8
1,554,336 - 13383 mRNA_5015 0.54 -1.7
1,554,381 + 13383 mRNA_5015 0.57 -2.6
1,554,640 + 13383 mRNA_5015 0.75 -1.8
1,554,906 - -0.2
1,554,940 + -3.0
1,555,038 + -0.8
1,555,080 - -1.7
1,555,086 + -3.8
1,555,235 - -2.2
1,555,270 + -1.1
1,555,516 - 1.0
1,555,780 + -0.7
1,555,816 + -1.1
1,555,818 + -2.1
1,555,820 + -1.3
1,555,947 + 13384 mRNA_5016 0.22 -3.9
1,555,965 + 13384 mRNA_5016 0.24 1.0