Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5006

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5005: 13373 - K10956 SEC61A protein transport protein SEC61 subunit alpha, at 1522802 to 1524731 13373 mRNA_5006: 13374 - K20299 VPS53 vacuolar protein sorting-associated protein 53, at 1525001 to 1528336 13374 mRNA_5007: 13375 - Hypothetical Protein, at 1528633 to 1529200 13375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,524,802 - -1.6
1,524,813 + -2.5
1,524,945 - 0.4
1,525,098 - -0.7
1,525,109 + -2.1
1,525,125 + -1.4
1,525,264 - -1.1
1,525,462 - 13374 mRNA_5006 0.14 -2.0
1,525,812 + 13374 mRNA_5006 0.24 -1.7
1,525,859 + 13374 mRNA_5006 0.26 -1.3
1,525,869 - 13374 mRNA_5006 0.26 -0.9
1,526,438 + 13374 mRNA_5006 0.43 -0.9
1,526,469 - 13374 mRNA_5006 0.44 -2.0
1,526,476 + 13374 mRNA_5006 0.44 -0.4
1,526,581 + 13374 mRNA_5006 0.47 0.6
1,526,915 + 13374 mRNA_5006 0.57 -0.8
1,527,056 + 13374 mRNA_5006 0.62 -1.7
1,527,351 - 13374 mRNA_5006 0.70 -0.9
1,527,550 - 13374 mRNA_5006 0.76 -0.5
1,527,654 + 13374 mRNA_5006 0.80 -0.7
1,527,951 - 13374 mRNA_5006 0.88 -2.9
1,528,028 - -1.5
1,528,081 - -1.6
1,528,219 + -0.3
1,528,244 + -1.4
1,528,387 - -2.6
1,528,390 + -1.3
1,528,392 - -1.3
1,528,395 + -0.8
1,528,395 + -0.9
1,528,397 - -0.0
1,528,407 - -1.5
1,528,412 + -0.3
1,528,417 - -2.5
1,528,444 - 1.2
1,528,540 - -0.6
1,528,554 + -1.2
1,528,565 + -3.4
1,528,568 - -3.8
1,528,614 - -2.3
1,528,622 + -4.1
1,528,727 - 13375 mRNA_5007 0.17 1.3
1,528,740 + 13375 mRNA_5007 0.19 -1.8
1,528,743 + 13375 mRNA_5007 0.19 -0.1
1,528,743 - 13375 mRNA_5007 0.19 -1.1
1,528,745 - 13375 mRNA_5007 0.20 -0.5
1,528,747 + 13375 mRNA_5007 0.20 -2.2
1,528,879 - 13375 mRNA_5007 0.43 -2.2
1,529,016 - 13375 mRNA_5007 0.67 0.5
1,529,038 - 13375 mRNA_5007 0.71 -0.9
1,529,040 - 13375 mRNA_5007 0.72 -0.6
1,529,041 + 13375 mRNA_5007 0.72 -1.8