Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4979

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4978: 13346 - K12883 NCBP2, CBP20 nuclear cap-binding protein subunit 2, at 1465278 to 1466176 13346 mRNA_4979: 13347 - K03575 mutY A/G-specific adenine glycosylase, at 1466290 to 1468594 13347 mRNA_4980: 13348 - K07432 ALG13 beta-1,4-N-acetylglucosaminyltransferase, at 1469023 to 1469757 13348

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,465,295 + -1.9
1,465,322 + -1.4
1,465,431 + 13346 mRNA_4978 0.17 -4.7
1,465,546 - 13346 mRNA_4978 0.30 -2.0
1,465,984 - 13346 mRNA_4978 0.79 -1.0
1,465,995 + 13346 mRNA_4978 0.80 -0.7
1,466,005 + 13346 mRNA_4978 0.81 -1.4
1,466,151 + -1.6
1,466,568 - 13347 mRNA_4979 0.12 -3.5
1,466,604 - 13347 mRNA_4979 0.14 -0.8
1,466,605 + 13347 mRNA_4979 0.14 -1.1
1,467,168 + 13347 mRNA_4979 0.38 -1.0
1,467,464 + 13347 mRNA_4979 0.51 -1.2
1,467,494 - 13347 mRNA_4979 0.52 -1.4
1,468,023 - 13347 mRNA_4979 0.75 -0.6
1,468,080 - 13347 mRNA_4979 0.78 -3.0
1,468,174 - 13347 mRNA_4979 0.82 -3.3
1,468,329 + 13347 mRNA_4979 0.88 -2.3
1,468,329 - 13347 mRNA_4979 0.88 -2.5
1,468,331 + 13347 mRNA_4979 0.89 -2.0
1,468,351 + 13347 mRNA_4979 0.89 -3.5
1,468,485 + -0.7
1,468,633 + -1.4
1,468,638 - -0.1
1,468,654 + -3.8
1,468,660 + -1.0
1,468,691 - 0.6
1,468,698 + -1.8
1,468,701 - -2.4
1,468,703 + -0.9
1,468,724 + -0.2
1,468,725 - 0.5
1,468,739 + -1.8
1,468,834 + -1.0
1,468,957 - -0.0