Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4964

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4963: 13331 - Hypothetical Protein, at 1417369 to 1418489 13331 mRNA_4964: 13332 - K08334 BECN1, VPS30, ATG6 beclin 1, at 1419421 to 1420996 13332 mRNA_4965: 13333 - K15156 MED14, RGR1 mediator of RNA polymerase II transcription subunit 14, at 1421714 to 1425387 13333

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,418,432 + -2.7
1,418,577 + -1.4
1,418,693 + -0.7
1,418,713 - 0.4
1,418,953 - -2.6
1,419,035 + -0.9
1,419,190 + -1.5
1,419,264 - -0.5
1,419,293 + -1.0
1,419,715 - 13332 mRNA_4964 0.19 -3.2
1,419,721 + 13332 mRNA_4964 0.19 -1.7
1,419,848 + 13332 mRNA_4964 0.27 -2.2
1,419,891 - 13332 mRNA_4964 0.30 -2.2
1,420,130 + 13332 mRNA_4964 0.45 -0.8
1,420,265 - 13332 mRNA_4964 0.54 -1.4
1,420,351 - 13332 mRNA_4964 0.59 -4.9
1,420,718 - 13332 mRNA_4964 0.82 -3.4
1,420,878 - -2.0
1,420,900 + -0.9
1,421,043 + -0.1
1,421,158 + -2.7
1,421,315 + -1.0
1,421,440 - -3.0
1,421,454 - -0.2
1,421,459 + -2.1