Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4949

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4948: 13316 - Hypothetical Protein, at 1381700 to 1382968 13316 mRNA_4949: 13317 - Hypothetical Protein, at 1383252 to 1384313 13317 mRNA_4950: 13318 - K02878 RP-L16, MRPL16, rplP large subunit ribosomal protein L16, at 1385064 to 1386007 13318

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,382,409 - 13316 mRNA_4948 0.56 -0.4
1,382,577 - 13316 mRNA_4948 0.69 -0.2
1,382,839 + 13316 mRNA_4948 0.90 -0.1
1,382,852 - -1.0
1,382,853 - -1.8
1,382,855 + -0.7
1,382,873 - -0.9
1,382,874 + -2.1
1,382,886 - -2.0
1,383,008 + -0.2
1,383,029 - -1.5
1,383,033 + -0.9
1,383,034 + -1.0
1,383,039 - -2.9
1,383,054 - -3.3
1,383,073 - -1.3
1,383,094 - -0.8
1,383,094 + -0.7
1,383,099 - -1.5
1,383,106 - -1.2
1,383,110 - -0.2
1,383,119 + -2.2
1,383,126 - -3.6
1,383,126 - -2.5
1,383,138 + -2.8
1,383,142 - 0.0
1,383,147 + -0.4
1,383,147 - -2.5
1,383,155 - -0.5
1,383,165 - -1.1
1,383,165 + -2.9
1,383,168 + -0.9
1,383,184 + -0.6
1,383,186 - -3.0
1,383,190 + -0.7
1,383,195 - -3.2
1,383,195 - -1.8
1,383,213 + -0.9
1,383,214 - -1.0
1,383,221 - -1.0
1,383,223 + -1.5
1,383,233 - -2.0
1,383,234 - -1.0
1,383,244 + 0.1
1,383,279 - -1.4
1,383,283 - -1.6
1,383,297 - -3.9
1,383,341 - -3.5
1,383,363 - 13317 mRNA_4949 0.10 -2.8
1,383,381 - 13317 mRNA_4949 0.12 -1.1
1,383,514 + 13317 mRNA_4949 0.25 -1.7
1,383,647 - 13317 mRNA_4949 0.37 -0.7
1,383,722 + 13317 mRNA_4949 0.44 -0.7
1,383,799 + 13317 mRNA_4949 0.52 -1.1
1,383,811 + 13317 mRNA_4949 0.53 -0.7
1,383,872 + 13317 mRNA_4949 0.58 -3.5
1,383,972 - 13317 mRNA_4949 0.68 -1.5
1,384,037 + 13317 mRNA_4949 0.74 -0.8
1,384,138 - 13317 mRNA_4949 0.83 -0.7
1,384,269 + -2.3
1,384,272 + -3.1
1,384,403 - -1.9
1,384,415 - -2.1
1,384,417 + 0.6
1,384,420 + 0.0
1,384,444 - -2.1
1,384,445 + -2.8
1,384,455 + -1.8
1,384,456 + -2.1
1,384,463 + -0.7
1,384,494 + -0.8
1,384,515 + -3.6
1,384,518 - -0.9
1,384,541 - -1.3
1,384,593 + -3.1
1,384,595 - -2.8
1,384,599 - 0.1
1,384,599 - -0.3
1,384,606 + -0.7
1,384,608 - 0.0
1,384,622 - -1.9
1,384,631 - -2.8
1,384,632 + -0.1
1,384,644 + -1.7
1,384,650 + -0.3
1,384,666 - -2.1
1,384,711 - 1.1
1,384,758 + 0.2
1,384,784 + -0.1
1,384,791 + -3.1
1,384,826 - -0.7
1,384,889 - -2.5
1,384,918 - -0.9
1,385,045 - -2.0