Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4942

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4941: 13309 - K12608 CAF16 CCR4-NOT complex subunit CAF16, at 1368414 to 1369977 13309 mRNA_4942: 13310 - Hypothetical Protein, at 1370208 to 1371359 13310 mRNA_4943: 13311 - K13095 SF1 splicing factor 1, at 1372018 to 1374079 13311

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,369,232 + 13309 mRNA_4941 0.52 -2.8
1,369,383 + 13309 mRNA_4941 0.62 -0.0
1,369,498 + 13309 mRNA_4941 0.69 -0.8
1,369,511 + 13309 mRNA_4941 0.70 -2.9
1,369,628 - 13309 mRNA_4941 0.78 -2.0
1,369,960 - -1.2
1,370,274 + -3.3
1,370,577 + 13310 mRNA_4942 0.32 -2.9
1,370,695 - 13310 mRNA_4942 0.42 -2.3
1,370,959 - 13310 mRNA_4942 0.65 -1.5
1,370,978 - 13310 mRNA_4942 0.67 -1.1
1,371,109 - 13310 mRNA_4942 0.78 -1.1
1,371,132 + 13310 mRNA_4942 0.80 -1.1
1,371,149 - 13310 mRNA_4942 0.82 -0.5
1,371,253 + -1.9
1,371,263 - -0.8
1,371,307 + -0.9
1,371,345 + -1.4
1,371,359 + -0.6
1,371,443 - -1.9
1,371,446 - -1.2
1,371,450 + -0.2
1,371,452 + -0.7
1,371,459 - -0.5
1,371,584 - -2.4
1,371,588 + -3.3
1,371,602 + -0.3
1,371,604 - 0.5
1,371,606 - -1.8
1,371,608 + -3.1
1,371,632 + -1.9
1,371,654 + 0.1
1,371,654 + -1.1
1,371,655 - -0.8
1,371,661 - -1.6
1,371,770 + -1.6
1,371,787 - 0.6
1,371,807 - -1.2
1,371,810 + -0.5
1,371,812 + -1.6
1,371,812 + -1.5
1,371,828 - -1.5
1,371,936 - -1.1
1,371,936 - -2.4
1,371,944 + -3.2
1,372,059 - 0.2
1,372,246 - 13311 mRNA_4943 0.11 -4.1