Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4922

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4921: 13289 - K12156 CYP83A1 cytochrome P450, family 83, subfamily A, polypeptide 1, at 1313385 to 1315387 13289 mRNA_4922: 13290 - K18670 YAK1 dual specificity protein kinase YAK1, at 1315814 to 1320351 13290 mRNA_4923: 13291 - K03141 TFIIH1, GTF2H1, TFB1 transcription initiation factor TFIIH subunit 1, at 1320698 to 1323090 13291

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,314,964 + 13289 mRNA_4921 0.79 0.0
1,315,111 - 13289 mRNA_4921 0.86 -1.0
1,315,438 + 1.2
1,315,708 + -1.6
1,316,226 + -1.3
1,316,304 - 13290 mRNA_4922 0.11 0.5
1,317,765 - 13290 mRNA_4922 0.43 0.5
1,318,081 + 13290 mRNA_4922 0.50 -1.4
1,318,083 - 13290 mRNA_4922 0.50 -0.9
1,318,371 + 13290 mRNA_4922 0.56 -2.6
1,318,397 + 13290 mRNA_4922 0.57 -2.7
1,318,500 - 13290 mRNA_4922 0.59 -1.9
1,318,702 + 13290 mRNA_4922 0.64 -2.2
1,318,838 + 13290 mRNA_4922 0.67 -0.7
1,319,046 - 13290 mRNA_4922 0.71 -1.0
1,319,534 - 13290 mRNA_4922 0.82 -0.3
1,319,848 - 13290 mRNA_4922 0.89 -1.7
1,319,966 - 3.1
1,319,989 + -1.8
1,320,149 - -1.4
1,320,169 + -3.7
1,320,299 - -2.4
1,320,404 + -1.3
1,320,410 + -0.5
1,320,423 + -2.2
1,320,428 + -2.6
1,320,428 - -2.7
1,320,433 - 1.4
1,320,439 - -3.2
1,320,462 + -3.1