Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4882

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4881: 13249 - K01890 FARSB, pheT phenylalanyl-tRNA synthetase beta chain, at 1212662 to 1215264 13249 mRNA_4882: 13250 - Hypothetical Protein, at 1215756 to 1216865 13250 mRNA_4883: 13251 - HMMPfam-Uncharacterised protein family (UPF0203)-PF05254, at 1217167 to 1217657 13251

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,215,273 + -0.2
1,215,283 + -0.8
1,215,430 + -0.6
1,215,432 - -2.2
1,215,439 - -2.7
1,215,441 + -2.0
1,215,457 - -0.5
1,215,483 - -2.3
1,215,576 - -0.8
1,215,605 - -1.8
1,215,716 + -2.2
1,215,725 - -3.7
1,215,729 - -2.6
1,216,024 - 13250 mRNA_4882 0.24 -1.5
1,216,341 - 13250 mRNA_4882 0.53 -1.9
1,216,360 + 13250 mRNA_4882 0.54 -1.6
1,216,478 - 13250 mRNA_4882 0.65 0.4
1,216,479 - 13250 mRNA_4882 0.65 -2.8
1,216,479 - 13250 mRNA_4882 0.65 -3.0
1,216,511 + 13250 mRNA_4882 0.68 -3.3
1,216,513 - 13250 mRNA_4882 0.68 -3.6
1,216,516 - 13250 mRNA_4882 0.68 -0.9
1,216,631 + 13250 mRNA_4882 0.79 -2.0
1,216,648 + 13250 mRNA_4882 0.80 -0.8
1,216,898 - -0.9
1,217,082 - -1.2
1,217,083 - -2.5
1,217,088 - -2.6
1,217,088 + -1.9
1,217,799 + 0.2
1,217,817 + -2.3
1,217,832 + -2.4