Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4879

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4878: 13246 - K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit, at 1204764 to 1207810 13246 mRNA_4879: 13247 - KOG1259 Nischarin, modulator of integrin alpha5 subunit action, at 1208439 to 1211006 13247 mRNA_4880: 13248 - K17795 TIM17 mitochondrial import inner membrane translocase subunit TIM17, at 1211374 to 1212342 13248

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,207,440 + 13246 mRNA_4878 0.88 -2.9
1,207,448 - 13246 mRNA_4878 0.88 -2.6
1,207,595 - -1.7
1,207,604 - -1.9
1,207,622 + -3.6
1,207,733 - -2.7
1,207,738 + -3.4
1,207,744 - -1.3
1,207,746 - -2.7
1,207,752 + -2.4
1,207,754 + -2.7
1,207,755 + -0.7
1,207,755 + -1.5
1,207,772 + -3.8
1,207,881 + -0.9
1,207,884 - -3.0
1,207,892 - -1.8
1,207,894 - -0.7
1,207,902 - -1.9
1,207,904 + -2.2
1,207,907 + -2.1
1,207,910 - -0.4
1,207,916 - 0.2
1,207,917 + 0.7
1,207,917 + 2.2
1,207,918 - 1.4
1,207,920 - -0.6
1,207,920 - -2.3
1,207,920 - -2.8
1,207,924 - -2.6
1,207,925 + -3.0
1,208,046 - -2.7
1,208,057 - -0.9
1,208,201 + -1.1
1,208,201 - -0.6
1,208,204 + -4.3
1,208,217 + 0.3
1,208,341 + -1.4
1,208,342 - -0.8
1,208,351 - -2.7
1,208,468 + -0.9
1,208,473 + -3.0
1,208,476 + -0.6
1,208,488 + -1.3
1,208,488 - -0.5
1,208,626 + -2.0
1,208,796 - 13247 mRNA_4879 0.14 -0.4
1,209,074 - 13247 mRNA_4879 0.25 -4.3
1,209,094 - 13247 mRNA_4879 0.26 -1.2
1,209,492 - 13247 mRNA_4879 0.41 -1.0
1,210,418 - 13247 mRNA_4879 0.77 -1.3
1,211,029 + -2.4
1,211,032 - -3.6
1,211,167 - 1.4