Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4878

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4878: 13246 - K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit, at 1204764 to 1207810 13246 mRNA_4879: 13247 - KOG1259 Nischarin, modulator of integrin alpha5 subunit action, at 1208439 to 1211006 13247

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,203,772 - -0.9
1,203,784 + -1.1
1,203,795 - -2.0
1,203,797 + -2.8
1,203,798 + -1.7
1,203,809 + -2.2
1,203,810 - 2.3
1,203,821 + -0.0
1,203,821 + -0.8
1,203,842 + -1.0
1,203,842 + -5.9
1,203,846 + 1.4
1,203,847 - 0.1
1,203,848 - 0.0
1,203,849 + -1.6
1,203,860 + 0.5
1,203,863 - 0.0
1,203,864 - 0.2
1,203,869 + -0.7
1,203,870 + 0.0
1,203,875 + -2.2
1,203,892 + -0.8
1,203,893 - -1.7
1,203,899 + -1.9
1,203,915 - 0.1
1,203,919 + -0.5
1,203,938 + 0.4
1,203,943 - -0.1
1,203,949 + 0.8
1,203,949 + -1.4
1,203,952 + -0.1
1,203,956 - 0.4
1,203,956 + -2.4
1,203,983 + -0.4
1,203,996 + -1.0
1,204,001 + -0.3
1,204,084 + -0.5
1,204,110 - -1.6
1,204,134 - -3.1
1,204,323 - -0.7
1,204,328 - -0.5
1,204,336 - -3.2
1,204,352 + -1.3
1,204,397 + -0.7
1,204,427 - -1.1
1,204,435 + -1.5
1,204,457 + -1.6
1,204,531 + -0.2
1,204,546 + -2.4
1,204,548 - -0.6
1,204,553 + -3.4
1,204,554 - -2.9
1,204,697 - -2.6
1,204,966 + -0.7
1,205,005 + -0.7
1,205,149 + 13246 mRNA_4878 0.13 -1.1
1,205,290 + 13246 mRNA_4878 0.17 -3.2
1,205,829 - 13246 mRNA_4878 0.35 -1.9
1,205,997 + 13246 mRNA_4878 0.40 -2.7
1,206,003 - 13246 mRNA_4878 0.41 -2.4
1,206,027 + 13246 mRNA_4878 0.41 -0.7
1,206,035 + 13246 mRNA_4878 0.42 -3.0
1,206,160 - 13246 mRNA_4878 0.46 -2.6
1,206,297 - 13246 mRNA_4878 0.50 -2.8
1,206,606 + 13246 mRNA_4878 0.60 -3.0
1,206,730 - 13246 mRNA_4878 0.65 -1.3
1,206,885 - 13246 mRNA_4878 0.70 -0.8
1,206,888 + 13246 mRNA_4878 0.70 -2.3
1,206,891 + 13246 mRNA_4878 0.70 -1.8
1,207,293 - 13246 mRNA_4878 0.83 -1.7
1,207,440 + 13246 mRNA_4878 0.88 -2.9
1,207,448 - 13246 mRNA_4878 0.88 -2.6
1,207,595 - -1.7
1,207,604 - -1.9
1,207,622 + -3.6
1,207,733 - -2.7
1,207,738 + -3.4
1,207,744 - -1.3
1,207,746 - -2.7
1,207,752 + -2.4
1,207,754 + -2.7
1,207,755 + -0.7
1,207,755 + -1.5
1,207,772 + -3.8
1,207,881 + -0.9
1,207,884 - -3.0
1,207,892 - -1.8
1,207,894 - -0.7
1,207,902 - -1.9
1,207,904 + -2.2
1,207,907 + -2.1
1,207,910 - -0.4
1,207,916 - 0.2
1,207,917 + 0.7
1,207,917 + 2.2
1,207,918 - 1.4
1,207,920 - -0.6
1,207,920 - -2.3
1,207,920 - -2.8
1,207,924 - -2.6
1,207,925 + -3.0
1,208,046 - -2.7
1,208,057 - -0.9
1,208,201 + -1.1
1,208,201 - -0.6
1,208,204 + -4.3
1,208,217 + 0.3
1,208,341 + -1.4
1,208,342 - -0.8
1,208,351 - -2.7
1,208,468 + -0.9
1,208,473 + -3.0
1,208,476 + -0.6
1,208,488 + -1.3
1,208,488 - -0.5
1,208,626 + -2.0
1,208,796 - 13247 mRNA_4879 0.14 -0.4