Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4869

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4868: 13236 - HMMPfam-DASH complex subunit Dad1-PF08649, at 1179404 to 1180039 13236 mRNA_4869: 13237 - K03364 CDH1 cell division cycle 20-like protein 1, cofactor of APC complex, at 1180583 to 1182754 13237 mRNA_4870: 13238 - KOG2533 Permease of the major facilitator superfamily, at 1183221 to 1185751 13238

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,179,849 + 13236 mRNA_4868 0.70 -2.2
1,179,989 + -0.0
1,180,123 - -0.7
1,180,256 - -2.2
1,180,257 + -1.9
1,180,263 + -2.5
1,180,287 + -2.4
1,180,417 - -0.2
1,180,422 + -1.9
1,180,428 + -2.5
1,180,430 - -0.2
1,180,570 - 0.1
1,180,727 - -1.3
1,180,740 + 0.1
1,180,856 + 13237 mRNA_4869 0.13 -0.4
1,181,112 + 13237 mRNA_4869 0.24 0.7
1,181,427 - 13237 mRNA_4869 0.39 -3.1
1,181,590 + 13237 mRNA_4869 0.46 -0.2
1,181,642 - 13237 mRNA_4869 0.49 -2.4
1,181,927 + 13237 mRNA_4869 0.62 -1.9
1,182,005 - 13237 mRNA_4869 0.65 -0.4
1,182,340 - 13237 mRNA_4869 0.81 -1.4
1,182,722 - -0.8