Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4864

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4863: 13231 - KOG0645 WD40 repeat protein, at 1168828 to 1170396 13231 mRNA_4864: 13232 - KOG0603 Ribosomal protein S6 kinase, at 1170543 to 1172403 13232 mRNA_4865: 13233 - K12860 CDC5L, CDC5, CEF1 pre-mRNA-splicing factor CDC5/CEF1, at 1173228 to 1176152 13233

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,170,428 - -2.4
1,171,274 - 13232 mRNA_4864 0.39 -2.3
1,171,286 - 13232 mRNA_4864 0.40 -0.9
1,171,860 - 13232 mRNA_4864 0.71 -4.1
1,172,008 - 13232 mRNA_4864 0.79 1.3
1,172,288 + -1.4
1,172,313 - -1.7
1,172,443 + -2.6
1,172,460 + -0.6
1,172,463 + -0.5
1,172,466 + -2.0
1,172,467 - -0.8
1,172,467 - -1.5
1,172,468 - -3.0
1,172,469 + -2.3
1,172,476 + -0.7
1,172,477 - -4.7
1,172,479 + -0.9
1,172,487 + -1.2
1,172,488 + -0.7
1,172,497 + -3.0
1,172,507 + -2.5
1,172,510 + -0.7
1,172,510 - -1.2
1,172,595 - -3.0
1,172,624 + -0.1
1,172,644 + 0.2
1,172,726 - -2.7
1,172,735 + -0.6
1,172,740 + -1.5
1,172,740 - -0.2
1,172,773 + -3.6
1,172,923 - -0.9