Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4852

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4851: 13219 - K06679 MAD1 mitotic spindle assembly checkpoint protein MAD1, at 1146547 to 1149479 13219 mRNA_4852: 13220 - Hypothetical Protein, at 1149636 to 1152739 13220 mRNA_4853: 13221 - Hypothetical Protein, at 1153001 to 1154455 13221

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,148,743 - 13219 mRNA_4851 0.75 1.4
1,149,121 - 13219 mRNA_4851 0.88 0.0
1,149,121 - 13219 mRNA_4851 0.88 0.5
1,149,153 - 13219 mRNA_4851 0.89 -1.2
1,149,266 + -3.0
1,149,274 - 0.8
1,149,283 - -1.3
1,149,426 + -1.0
1,149,427 - 1.6
1,149,476 + -1.3
1,149,560 - -1.1
1,149,560 - -2.3
1,149,570 - -1.5
1,149,599 + -0.8
1,149,694 + 0.2
1,149,717 - -2.6
1,149,718 + -1.0
1,149,760 - -3.2
1,150,034 + 13220 mRNA_4852 0.13 -2.2
1,150,158 + 13220 mRNA_4852 0.17 -3.2
1,150,164 - 13220 mRNA_4852 0.17 0.7
1,150,326 + 13220 mRNA_4852 0.22 -0.8
1,150,345 - 13220 mRNA_4852 0.23 0.2
1,150,438 - 13220 mRNA_4852 0.26 -0.5
1,150,460 + 13220 mRNA_4852 0.27 0.0
1,150,469 - 13220 mRNA_4852 0.27 -0.8
1,150,610 - 13220 mRNA_4852 0.31 -0.4
1,150,946 + 13220 mRNA_4852 0.42 -1.7
1,151,187 - 13220 mRNA_4852 0.50 -0.9
1,151,324 - 13220 mRNA_4852 0.54 2.3
1,151,459 + 13220 mRNA_4852 0.59 -0.4
1,151,462 - 13220 mRNA_4852 0.59 -2.2
1,151,727 + 13220 mRNA_4852 0.67 -1.6
1,151,880 + 13220 mRNA_4852 0.72 -1.2
1,152,634 - -2.5
1,152,757 - -1.7
1,152,766 + -0.1
1,153,048 + -1.5
1,153,077 + -1.6
1,153,140 + 0.1
1,153,205 + 13221 mRNA_4853 0.14 -0.0
1,153,274 - 13221 mRNA_4853 0.19 -2.3
1,153,457 - 13221 mRNA_4853 0.31 -2.8