Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4815

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4814: 13182 - HMMPfam-SnoaL-like domain-PF13577,SUPERFAMILY--SSF54427, at 1074739 to 1075935 13182 mRNA_4815: 13183 - SUPERFAMILY--SSF143575, at 1075987 to 1081197 13183 mRNA_4816: 13184 - Interpro Protein of unknown function (DUF1777), at 1081672 to 1082583 13184

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,074,993 - 13182 mRNA_4814 0.21 -0.8
1,075,091 - 13182 mRNA_4814 0.29 -1.6
1,075,115 - 13182 mRNA_4814 0.31 1.1
1,075,118 + 13182 mRNA_4814 0.32 -1.4
1,075,350 + 13182 mRNA_4814 0.51 -1.3
1,075,520 + 13182 mRNA_4814 0.65 -1.6
1,075,522 + 13182 mRNA_4814 0.65 -2.1
1,075,819 - -1.3
1,076,023 + 0.3
1,076,055 - -0.8
1,076,130 + -0.3
1,076,356 - -2.0
1,076,483 + -1.8
1,076,675 + 13183 mRNA_4815 0.13 -1.1
1,076,804 + 13183 mRNA_4815 0.16 -0.3
1,076,827 - 13183 mRNA_4815 0.16 -1.2
1,076,901 + 13183 mRNA_4815 0.18 0.2
1,076,939 - 13183 mRNA_4815 0.18 -1.2
1,077,249 - 13183 mRNA_4815 0.24 -1.6
1,077,275 - 13183 mRNA_4815 0.25 -3.7
1,077,362 - 13183 mRNA_4815 0.26 -1.9
1,077,405 - 13183 mRNA_4815 0.27 -2.6
1,077,557 + 13183 mRNA_4815 0.30 -0.4
1,078,207 - 13183 mRNA_4815 0.43 -1.2
1,078,387 - 13183 mRNA_4815 0.46 -0.8
1,078,393 - 13183 mRNA_4815 0.46 -0.9
1,078,445 + 13183 mRNA_4815 0.47 -1.1
1,078,465 - 13183 mRNA_4815 0.48 0.1
1,078,639 + 13183 mRNA_4815 0.51 -2.8
1,078,692 - 13183 mRNA_4815 0.52 -0.4
1,078,730 + 13183 mRNA_4815 0.53 -1.6
1,078,739 + 13183 mRNA_4815 0.53 -1.4
1,079,062 + 13183 mRNA_4815 0.59 -0.9
1,079,122 - 13183 mRNA_4815 0.60 -0.5
1,079,302 + 13183 mRNA_4815 0.64 -1.3
1,079,567 + 13183 mRNA_4815 0.69 0.0
1,079,599 - 13183 mRNA_4815 0.69 0.4
1,079,840 + 13183 mRNA_4815 0.74 -1.6
1,080,279 - 13183 mRNA_4815 0.82 -1.6
1,080,297 + 13183 mRNA_4815 0.83 -1.4
1,080,313 - 13183 mRNA_4815 0.83 0.4
1,080,326 - 13183 mRNA_4815 0.83 -0.0
1,080,327 + 13183 mRNA_4815 0.83 -0.9
1,080,335 + 13183 mRNA_4815 0.83 1.2
1,080,361 - 13183 mRNA_4815 0.84 -2.3
1,080,599 - 13183 mRNA_4815 0.89 1.7
1,080,756 - -1.6
1,080,907 + -1.6
1,080,923 + -4.0
1,081,064 - -0.9
1,081,084 - -0.4
1,081,106 - -0.4
1,081,181 - -1.9
1,081,208 + -1.7
1,081,234 + -1.7
1,081,359 - -0.4
1,081,360 + 0.8
1,081,367 + -2.1