Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4800

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4799: 13167 - K05676 ABCD2, ALDL1 ATP-binding cassette, subfamily D (ALD), member 2, at 1038794 to 1042061 13167 mRNA_4800: 13168 - HMMPfam-Glycosyl transferases group 1-PF00534,SUPERFAMILY--SSF53756, at 1042845 to 1046169 13168 mRNA_4801: 13169 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 1046260 to 1047966 13169

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,041,908 - -1.0
1,041,924 - -0.0
1,042,044 - 1.4
1,042,051 - -2.2
1,042,055 + -1.5
1,042,063 - 0.2
1,042,066 - -3.1
1,042,067 + -0.2
1,042,070 + -2.9
1,042,209 - -1.6
1,042,216 + -2.2
1,042,358 + -2.3
1,042,626 - -2.6
1,042,627 - -1.4
1,042,634 + -0.7
1,042,652 - -0.4
1,042,659 + -1.3
1,042,662 + 0.1
1,042,797 - -1.2
1,043,094 - -0.4
1,043,108 - -1.7
1,043,117 + -1.5
1,043,400 + 13168 mRNA_4800 0.17 -0.7
1,043,402 + 13168 mRNA_4800 0.17 -2.4
1,043,447 - 13168 mRNA_4800 0.18 -1.0
1,043,968 + 13168 mRNA_4800 0.34 -1.4
1,043,986 + 13168 mRNA_4800 0.34 -1.6
1,044,131 - 13168 mRNA_4800 0.39 -3.6
1,044,279 - 13168 mRNA_4800 0.43 -1.5
1,044,874 - 13168 mRNA_4800 0.61 -1.3
1,045,307 + 13168 mRNA_4800 0.74 -1.2
1,045,587 - 13168 mRNA_4800 0.82 -0.5
1,045,646 + 13168 mRNA_4800 0.84 -1.4
1,045,881 + -0.7
1,045,895 + -1.4
1,046,015 - -2.3
1,046,143 + -0.9
1,046,170 + -3.6
1,046,297 - -1.9
1,046,299 - -1.9
1,047,022 - 13169 mRNA_4801 0.45 -2.6
1,047,039 + 13169 mRNA_4801 0.46 -1.3