Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4784

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4783: 13151 - Hypothetical Protein, at 1003364 to 1007134 13151 mRNA_4784: 13152 - BLAST calmodulin-like protein [Mycena chlorophos], at 1008050 to 1008769 13152 mRNA_4785: 13153 - KOG1577 Aldo/keto reductase family proteins, at 1009079 to 1010386 13153

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,007,066 - -1.5
1,007,073 - -2.8
1,007,076 - -3.2
1,007,082 + -0.6
1,007,097 - -0.4
1,007,110 + -1.9
1,007,211 + -3.0
1,007,261 - -2.5
1,007,400 + -2.3
1,007,414 - -0.7
1,007,430 + 0.4
1,007,483 - -4.0
1,007,664 - 0.1
1,007,677 + -1.1
1,007,684 - -3.0
1,007,700 - -2.3
1,007,716 - -1.1
1,007,732 - -0.7
1,007,845 + 0.4
1,008,134 - 13152 mRNA_4784 0.12 -2.6
1,008,416 - 13152 mRNA_4784 0.51 0.5
1,008,712 - 0.5
1,008,730 - -1.4
1,008,998 - -1.2
1,009,007 - -2.3
1,009,040 + -0.7
1,009,302 - 13153 mRNA_4785 0.17 0.3
1,009,307 - 13153 mRNA_4785 0.17 -0.2
1,009,315 - 13153 mRNA_4785 0.18 0.2
1,009,330 - 13153 mRNA_4785 0.19 -3.2
1,009,731 + 13153 mRNA_4785 0.50 -2.8