Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4768

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4767: 13135 - KOG1263 Multicopper oxidases, at 963483 to 966203 13135 mRNA_4768: 13136 - Hypothetical Protein, at 966490 to 969299 13136 mRNA_4769: 13137 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 969625 to 971504 13137

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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965,520 + 13135 mRNA_4767 0.75 0.1
965,595 - 13135 mRNA_4767 0.78 -3.1
965,611 - 13135 mRNA_4767 0.78 -2.4
965,660 + 13135 mRNA_4767 0.80 -3.3
965,667 - 13135 mRNA_4767 0.80 -2.9
965,667 + 13135 mRNA_4767 0.80 -1.0
965,672 + 13135 mRNA_4767 0.80 -3.0
965,785 - 13135 mRNA_4767 0.85 -0.5
965,799 - 13135 mRNA_4767 0.85 -2.9
965,800 - 13135 mRNA_4767 0.85 0.5
965,959 + 0.2
966,111 + -2.1
966,126 + -0.3
966,150 + 1.1
966,190 + -3.0
966,243 - -2.1
966,282 - -3.7
966,296 + -3.7
966,443 + -1.6
966,535 - -1.5
966,540 + 0.3
966,863 - 13136 mRNA_4768 0.13 -0.2
967,112 + 13136 mRNA_4768 0.22 -0.6
967,121 + 13136 mRNA_4768 0.22 -0.6
967,121 + 13136 mRNA_4768 0.22 -1.6
967,219 + 13136 mRNA_4768 0.26 -1.1
967,396 - 13136 mRNA_4768 0.32 -0.9
967,598 - 13136 mRNA_4768 0.39 -2.9
967,614 - 13136 mRNA_4768 0.40 -1.3
967,633 + 13136 mRNA_4768 0.41 -1.7
967,636 + 13136 mRNA_4768 0.41 -1.1
967,675 - 13136 mRNA_4768 0.42 1.2
967,737 + 13136 mRNA_4768 0.44 0.6
967,959 - 13136 mRNA_4768 0.52 -1.9
967,966 - 13136 mRNA_4768 0.53 -1.7
967,971 - 13136 mRNA_4768 0.53 -0.7
968,098 - 13136 mRNA_4768 0.57 0.0
968,103 - 13136 mRNA_4768 0.57 -1.6
968,103 + 13136 mRNA_4768 0.57 -1.7
968,103 - 13136 mRNA_4768 0.57 -0.9
968,109 - 13136 mRNA_4768 0.58 -0.4
968,115 - 13136 mRNA_4768 0.58 -1.0
968,115 - 13136 mRNA_4768 0.58 -0.9
968,129 - 13136 mRNA_4768 0.58 -1.6
968,135 - 13136 mRNA_4768 0.59 -1.1
968,152 + 13136 mRNA_4768 0.59 0.3
968,154 + 13136 mRNA_4768 0.59 -2.8
968,193 - 13136 mRNA_4768 0.61 -2.3
968,193 + 13136 mRNA_4768 0.61 -0.4
968,231 - 13136 mRNA_4768 0.62 -1.6
968,280 + 13136 mRNA_4768 0.64 -1.9
968,281 - 13136 mRNA_4768 0.64 -1.5
968,445 - 13136 mRNA_4768 0.70 -3.2
968,580 - 13136 mRNA_4768 0.74 -0.9
968,603 + 13136 mRNA_4768 0.75 -2.1
968,612 - 13136 mRNA_4768 0.76 -0.7
968,732 + 13136 mRNA_4768 0.80 -0.9
968,860 + 13136 mRNA_4768 0.84 -2.7
968,872 - 13136 mRNA_4768 0.85 -3.4
969,046 - -1.9
969,154 + -0.7
969,160 - -3.3
969,428 - -2.7
969,437 + -3.1
969,447 - -2.9
969,524 + -0.8
969,635 - -0.8