Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4752

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4751: 13119 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 921381 to 922742 13119 mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922993 to 927297 13120 mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927583 to 931061 13121

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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922,065 - 13119 mRNA_4751 0.50 -2.6
922,244 + 13119 mRNA_4751 0.63 -1.4
922,295 - 13119 mRNA_4751 0.67 -2.4
922,370 + 13119 mRNA_4751 0.73 -0.6
922,541 + 13119 mRNA_4751 0.85 -1.8
922,542 - 13119 mRNA_4751 0.85 -1.0
922,551 - 13119 mRNA_4751 0.86 -2.7
922,585 + 13119 mRNA_4751 0.88 -1.8
922,697 + -1.7
923,294 - -2.2
923,310 - 1.3
923,474 + 13120 mRNA_4752 0.11 0.8
923,596 - 13120 mRNA_4752 0.14 -2.5
923,728 + 13120 mRNA_4752 0.17 -1.7
923,743 + 13120 mRNA_4752 0.17 -1.7
923,754 + 13120 mRNA_4752 0.18 -2.0
923,890 - 13120 mRNA_4752 0.21 -2.5
923,946 + 13120 mRNA_4752 0.22 -1.5
924,002 - 13120 mRNA_4752 0.23 -4.2
924,005 - 13120 mRNA_4752 0.24 -2.2
924,009 + 13120 mRNA_4752 0.24 -2.3
924,431 - 13120 mRNA_4752 0.33 -1.0
924,623 + 13120 mRNA_4752 0.38 -1.8
924,627 - 13120 mRNA_4752 0.38 -1.1
925,597 - 13120 mRNA_4752 0.60 -2.0
925,669 + 13120 mRNA_4752 0.62 -2.3
926,157 + 13120 mRNA_4752 0.73 -1.3
926,194 + 13120 mRNA_4752 0.74 0.2
926,311 - 13120 mRNA_4752 0.77 -0.2
926,496 - 13120 mRNA_4752 0.81 -2.5
926,672 - 13120 mRNA_4752 0.85 -4.1
926,822 + 13120 mRNA_4752 0.89 -0.3
926,841 + 13120 mRNA_4752 0.89 -1.2
926,930 - -3.0
926,936 - -1.2
927,146 + -1.6
927,225 - -1.7
927,384 - -0.4
927,687 + -0.2
928,093 + 13121 mRNA_4753 0.15 0.2
928,145 - 13121 mRNA_4753 0.16 -0.2
928,208 - 13121 mRNA_4753 0.18 0.4
928,215 + 13121 mRNA_4753 0.18 -3.1