Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4737

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4736: 13104 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 888664 to 889665 13104 mRNA_4737: 13105 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 889765 to 891262 13105 mRNA_4738: 13106 - K01738 cysK cysteine synthase A, at 891331 to 893508 13106

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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888,817 - 13104 mRNA_4736 0.15 -2.1
889,039 + 13104 mRNA_4736 0.37 -1.2
889,192 - 13104 mRNA_4736 0.53 -0.5
889,282 - 13104 mRNA_4736 0.62 0.9
889,296 + 13104 mRNA_4736 0.63 -2.1
889,297 - 13104 mRNA_4736 0.63 -1.3
889,301 - 13104 mRNA_4736 0.64 -1.3
889,319 + 13104 mRNA_4736 0.65 -1.2
889,440 + 13104 mRNA_4736 0.77 -1.9
889,564 - 13104 mRNA_4736 0.90 -3.6
889,586 - -1.6
889,602 - -1.9
889,696 + -0.2
889,703 + -2.7
889,723 + -0.1
889,731 + -3.1
889,738 + -3.2
889,747 + -0.6
889,750 - -1.9
889,751 + -1.1
889,828 + -2.6
889,892 - -2.1
889,920 + 13105 mRNA_4737 0.10 -4.0
889,926 + 13105 mRNA_4737 0.11 -3.5
889,929 - 13105 mRNA_4737 0.11 -3.4
890,026 + 13105 mRNA_4737 0.17 0.3
890,056 + 13105 mRNA_4737 0.19 -1.7
890,160 + 13105 mRNA_4737 0.26 -4.6
890,323 - 13105 mRNA_4737 0.37 -0.3
890,357 - 13105 mRNA_4737 0.40 -1.9
890,467 + 13105 mRNA_4737 0.47 -1.9
890,483 + 13105 mRNA_4737 0.48 -4.5
890,494 + 13105 mRNA_4737 0.49 -0.6
890,754 - 13105 mRNA_4737 0.66 -2.2
890,755 - 13105 mRNA_4737 0.66 -2.1
890,762 + 13105 mRNA_4737 0.67 -4.4
890,921 - 13105 mRNA_4737 0.77 -1.7
891,485 - 0.5
891,512 - -4.0
891,513 + -1.1
891,513 + -1.9
891,682 - 13106 mRNA_4738 0.16 0.8
891,683 + 13106 mRNA_4738 0.16 -1.3
891,698 + 13106 mRNA_4738 0.17 -3.8
891,775 + 13106 mRNA_4738 0.20 -0.2
891,792 + 13106 mRNA_4738 0.21 -1.9
891,826 + 13106 mRNA_4738 0.23 -3.7
892,050 - 13106 mRNA_4738 0.33 -0.1
892,060 - 13106 mRNA_4738 0.33 -0.0
892,074 - 13106 mRNA_4738 0.34 -2.1
892,090 + 13106 mRNA_4738 0.35 -3.5
892,202 - 13106 mRNA_4738 0.40 0.6