Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4735

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4734: 13102 - Hypothetical Protein, at 883185 to 884845 13102 mRNA_4735: 13103 - K03654 recQ ATP-dependent DNA helicase RecQ, at 885330 to 888560 13103 mRNA_4736: 13104 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 888664 to 889665 13104

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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884,338 - 13102 mRNA_4734 0.69 -2.7
884,713 - -1.9
884,958 + -1.1
885,041 - -1.5
885,160 - -0.6
885,162 - -3.0
885,165 + -3.2
885,179 - -0.5
885,445 + -1.0
885,462 - 0.5
885,469 - 1.2
885,489 + -1.8
885,597 - -1.2
885,601 - -1.8
885,606 + -2.4
885,613 + -2.8
885,620 + -3.6
885,627 + -2.4
885,650 + -3.8
885,790 - 13103 mRNA_4735 0.14 -1.5
885,812 + 13103 mRNA_4735 0.15 -2.1
885,927 + 13103 mRNA_4735 0.18 -3.7
885,937 - 13103 mRNA_4735 0.19 0.2
886,010 - 13103 mRNA_4735 0.21 -3.4
886,011 + 13103 mRNA_4735 0.21 -2.3
886,044 + 13103 mRNA_4735 0.22 -1.4
886,061 + 13103 mRNA_4735 0.23 -3.0
886,204 - 13103 mRNA_4735 0.27 -1.1
886,512 - 13103 mRNA_4735 0.37 -1.8
886,639 + 13103 mRNA_4735 0.41 -2.9
886,791 - 13103 mRNA_4735 0.45 -3.0
886,805 - 13103 mRNA_4735 0.46 -2.0
886,827 + 13103 mRNA_4735 0.46 -1.9
887,103 - 13103 mRNA_4735 0.55 -0.1
887,127 - 13103 mRNA_4735 0.56 -0.9
887,208 - 13103 mRNA_4735 0.58 -2.4
887,338 - 13103 mRNA_4735 0.62 -2.0
887,625 - 13103 mRNA_4735 0.71 -1.9
887,819 + 13103 mRNA_4735 0.77 -3.0
887,840 - 13103 mRNA_4735 0.78 -1.0
887,900 + 13103 mRNA_4735 0.80 -1.0
887,904 + 13103 mRNA_4735 0.80 -1.3
887,945 + 13103 mRNA_4735 0.81 0.8
887,946 - 13103 mRNA_4735 0.81 -1.7
888,080 - 13103 mRNA_4735 0.85 0.1
888,117 - 13103 mRNA_4735 0.86 0.1
888,121 + 13103 mRNA_4735 0.86 -1.1
888,396 + -0.3
888,397 - -1.9
888,534 + -2.0
888,573 - -1.3
888,587 + -3.4
888,817 - 13104 mRNA_4736 0.15 -2.1
889,039 + 13104 mRNA_4736 0.37 -1.2
889,192 - 13104 mRNA_4736 0.53 -0.5
889,282 - 13104 mRNA_4736 0.62 0.9
889,296 + 13104 mRNA_4736 0.63 -2.1
889,297 - 13104 mRNA_4736 0.63 -1.3
889,301 - 13104 mRNA_4736 0.64 -1.3
889,319 + 13104 mRNA_4736 0.65 -1.2
889,440 + 13104 mRNA_4736 0.77 -1.9