Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4734

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4733: 13101 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 881363 to 882284 13101 mRNA_4734: 13102 - Hypothetical Protein, at 883185 to 884845 13102 mRNA_4735: 13103 - K03654 recQ ATP-dependent DNA helicase RecQ, at 885330 to 888560 13103

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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882,358 - -2.2
882,366 - -3.4
882,384 - 1.5
882,385 + -0.8
882,413 - -0.5
882,645 - -1.2
882,823 - -3.3
882,826 + 0.4
882,829 - -1.4
882,829 + -1.3
882,833 + -1.3
882,833 + -4.2
882,837 - -1.6
882,842 + 0.3
882,843 + -0.8
882,846 + -2.3
882,846 - -2.0
882,848 + -3.0
882,923 - -2.2
882,967 + -0.3
882,987 + -1.5
883,014 + -1.4
883,111 - 0.2
883,121 + -2.4
883,122 + -3.6
883,125 + -1.1
883,125 - -1.4
883,126 - -1.0
883,130 + -1.9
883,292 + -3.6
883,303 + 0.1
883,435 - 13102 mRNA_4734 0.15 -2.7
883,568 + 13102 mRNA_4734 0.23 -1.3
883,741 + 13102 mRNA_4734 0.33 -1.1
883,768 + 13102 mRNA_4734 0.35 -0.3
884,338 - 13102 mRNA_4734 0.69 -2.7
884,713 - -1.9
884,958 + -1.1
885,041 - -1.5
885,160 - -0.6
885,162 - -3.0
885,165 + -3.2
885,179 - -0.5
885,445 + -1.0
885,462 - 0.5
885,469 - 1.2
885,489 + -1.8
885,597 - -1.2
885,601 - -1.8
885,606 + -2.4
885,613 + -2.8
885,620 + -3.6
885,627 + -2.4
885,650 + -3.8
885,790 - 13103 mRNA_4735 0.14 -1.5
885,812 + 13103 mRNA_4735 0.15 -2.1