Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4712

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4711: 13079 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 826547 to 830720 13079 mRNA_4712: 13080 - HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358, at 830953 to 834055 13080 mRNA_4713: 13081 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 834390 to 838234 13081

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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829,970 - 13079 mRNA_4711 0.82 -2.7
830,076 + 13079 mRNA_4711 0.85 -1.1
830,162 + 13079 mRNA_4711 0.87 -0.2
830,411 - -1.2
830,518 - -3.1
830,525 + -0.9
830,527 - 0.4
830,644 + -1.6
830,794 + -0.4
830,943 - -5.1
831,409 + 13080 mRNA_4712 0.15 -3.9
831,521 - 13080 mRNA_4712 0.18 -2.2
831,703 - 13080 mRNA_4712 0.24 -2.9
831,848 + 13080 mRNA_4712 0.29 -2.0
832,424 - 13080 mRNA_4712 0.47 -1.3
832,562 + 13080 mRNA_4712 0.52 -2.2
832,575 + 13080 mRNA_4712 0.52 -0.0
832,709 - 13080 mRNA_4712 0.57 -1.2
832,841 - 13080 mRNA_4712 0.61 -0.7
832,886 - 13080 mRNA_4712 0.62 -4.0
833,009 - 13080 mRNA_4712 0.66 -3.0
833,158 - 13080 mRNA_4712 0.71 -2.6
833,589 - 13080 mRNA_4712 0.85 -1.3
833,737 + 13080 mRNA_4712 0.90 -0.2
833,744 - 13080 mRNA_4712 0.90 -0.3
833,799 + -2.6
833,805 - -1.8
833,861 - -1.0
833,877 - -1.2
833,888 + -1.1
833,889 - -0.9
833,892 + -0.4
833,907 + -1.5
833,908 - -3.5
833,909 + -2.2
833,915 - -1.1
834,029 + -2.0
834,035 - -1.7
834,045 - -3.3
834,181 - -2.9
834,190 - -5.3
834,200 - -0.9
834,201 - 0.1
834,201 + -1.6
834,201 + -1.3
834,205 + -0.9
834,216 + -1.9
834,222 + -2.2
834,344 - -3.7
834,350 + -2.8
834,474 + -1.7
834,489 + -0.5