Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4708

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4707: 13075 - KOG4431 Uncharacterized protein, induced by hypoxia , at 818806 to 819404 13075 mRNA_4708: 13076 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 819652 to 821476 13076 mRNA_4709: 13077 - Hypothetical Protein, at 821817 to 823479 13077

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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818,779 - -0.6
818,783 + -1.3
818,784 + -2.2
818,903 - 13075 mRNA_4707 0.16 -1.4
819,086 + 13075 mRNA_4707 0.47 -3.1
819,219 - 13075 mRNA_4707 0.69 -2.9
819,501 - -1.6
819,512 - -2.8
819,516 + -3.0
819,521 - -1.4
819,523 + -3.3
819,534 + -2.1
819,648 - 0.4
819,648 - -1.5
819,781 + -1.8
819,870 + 13076 mRNA_4708 0.12 -0.5
819,949 + 13076 mRNA_4708 0.16 -1.4
819,972 - 13076 mRNA_4708 0.18 0.3
820,105 - 13076 mRNA_4708 0.25 -2.0
820,237 - 13076 mRNA_4708 0.32 -1.3
820,609 - 13076 mRNA_4708 0.52 -1.1
820,668 - 13076 mRNA_4708 0.56 -0.4
820,724 - 13076 mRNA_4708 0.59 -0.6
821,212 + 13076 mRNA_4708 0.85 -3.1
821,364 + -2.3
821,450 - -1.4
822,080 - 13077 mRNA_4709 0.16 1.0
822,199 - 13077 mRNA_4709 0.23 -3.3
822,252 - 13077 mRNA_4709 0.26 -1.1
822,303 - 13077 mRNA_4709 0.29 -0.3