Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4659

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4658: 13026 - Hypothetical Protein, at 705825 to 708792 13026 mRNA_4659: 13027 - KOG1134 Uncharacterized conserved protein, at 709545 to 713167 13027 mRNA_4660: 13028 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2, at 713553 to 716343 13028

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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708,664 + -1.4
708,686 + -1.4
708,763 - -1.4
708,859 - -2.6
708,962 + -0.8
708,971 - -2.6
708,971 - -0.7
708,977 + -2.3
708,982 + -1.4
708,984 - -2.0
708,993 - -1.1
708,995 + -2.1
708,995 - -0.6
708,995 - -1.7
708,996 - -4.2
708,998 + -0.9
709,007 + -2.9
709,011 + 1.1
709,022 + 0.5
709,028 + -1.3
709,047 + -2.6
709,055 + -2.2
709,061 - -0.1
709,062 + 0.6
709,077 - -3.2
709,077 - -1.7
709,079 + -0.1
709,082 - -1.3
709,104 - -0.0
709,115 + 0.6
709,117 + -1.1
709,119 - -0.5
709,120 + -1.5
709,125 - -0.7
709,128 + 0.7
709,137 - -0.1
709,146 + -2.0
709,187 - -0.3
709,192 + 2.0
709,207 + -0.8
709,207 - -0.1
709,214 + -2.3
709,219 - -2.1
709,219 + -0.9
709,224 + -0.2
709,226 + -1.0
709,230 + 1.6
709,231 - -0.3
709,254 - -1.3
709,256 - -1.7
709,258 + -0.2
709,259 + -0.5
709,261 - 0.2
709,261 - -0.5
709,267 + -0.4
709,267 - -1.1
709,268 + -2.4
709,268 + -2.7
709,269 + -1.0
709,275 + -2.7
709,278 - 0.2
709,279 - -2.0
709,288 - -3.8
709,289 + -0.8
709,289 + -3.0
709,294 + 0.1
709,295 - -0.1
709,305 + -1.6
709,306 - -3.0
709,307 - -4.3
709,310 - -3.3
709,311 - -1.9
709,312 + -3.6
709,336 + -0.9
709,419 - -3.7
709,452 - 0.5
710,141 - 13027 mRNA_4659 0.16 -3.0
711,453 - 13027 mRNA_4659 0.53 -1.4
712,599 + 13027 mRNA_4659 0.84 0.8
712,884 - -1.0
712,901 - -1.7
712,918 - -1.1
712,932 + -1.7
713,060 + 0.4
713,213 + -1.4
713,215 + -0.2
713,216 - -3.5
713,216 - -1.3
713,223 + -1.9
713,225 - -2.1
713,239 + -0.5
713,244 - -0.9
713,249 - -2.2
713,249 - -0.1
713,301 + -2.1
713,303 + 0.3
713,312 - -2.8
713,326 - 0.1
713,328 - -1.2
713,329 - -2.0
713,331 + -2.6
713,331 + -1.7
713,341 + -1.1
713,348 - -0.1
713,351 + -0.6
713,360 - -2.4
713,367 + -1.3
713,382 - 0.6
713,391 + -1.7
713,487 - -3.2
713,523 - 0.6
713,530 - -2.6
713,695 - -1.7
713,990 - 13028 mRNA_4660 0.16 -1.0
714,137 + 13028 mRNA_4660 0.21 -2.2