Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4648

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4647: 13015 - K03032 PSMD1, RPN2 26S proteasome regulatory subunit N2, at 684637 to 688290 13015 mRNA_4648: 13016 - HMMPfam-Mediator complex subunit Med5-PF08689, at 688387 to 691863 13016 mRNA_4649: 13017 - K03934 NDUFS1 NADH dehydrogenase (ubiquinone) Fe-S protein 1, at 692072 to 694733 13017

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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687,716 + 13015 mRNA_4647 0.84 -1.0
688,331 - 0.1
688,360 - -0.2
688,453 - -0.9
688,631 - -3.2
689,350 - 13016 mRNA_4648 0.28 -4.1
689,370 - 13016 mRNA_4648 0.28 -1.2
690,116 - 13016 mRNA_4648 0.50 0.4
690,287 - 13016 mRNA_4648 0.55 -2.7
690,394 + 13016 mRNA_4648 0.58 -0.9
690,441 + 13016 mRNA_4648 0.59 0.6
690,515 + 13016 mRNA_4648 0.61 -1.4
690,561 + 13016 mRNA_4648 0.63 -1.8
691,152 - 13016 mRNA_4648 0.80 -1.1
691,270 + 13016 mRNA_4648 0.83 -0.8
691,311 - 13016 mRNA_4648 0.84 -1.4
691,338 + 13016 mRNA_4648 0.85 0.1
691,496 + 13016 mRNA_4648 0.89 -1.0
691,623 + -0.8
691,888 - -2.7
692,073 - 0.8
692,077 - -0.2
692,232 + -3.0