Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4638

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4637: 13005 - Hypothetical Protein, at 661764 to 663098 13005 mRNA_4638: 13006 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839,SUPERFAMILY--SSF52266, at 663192 to 664874 13006 mRNA_4639: 13007 - KOG3469 Cytochrome c oxidase, subunit VIa/COX13, at 665005 to 666466 13007

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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662,271 - 13005 mRNA_4637 0.38 -2.8
662,272 + 13005 mRNA_4637 0.38 -1.1
662,540 - 13005 mRNA_4637 0.58 -2.3
662,715 - 13005 mRNA_4637 0.71 0.4
662,731 - 13005 mRNA_4637 0.72 -0.9
662,924 + 13005 mRNA_4637 0.87 -1.9
663,169 + -0.9
663,519 - 13006 mRNA_4638 0.19 -1.6
663,745 + 13006 mRNA_4638 0.33 -1.0
663,787 + 13006 mRNA_4638 0.35 -0.4
664,058 + 13006 mRNA_4638 0.51 0.3
664,311 + 13006 mRNA_4638 0.66 0.0
664,505 - 13006 mRNA_4638 0.78 -0.1
664,527 - 13006 mRNA_4638 0.79 -0.1
664,637 - 13006 mRNA_4638 0.86 -0.5
664,641 + 13006 mRNA_4638 0.86 -3.5
664,647 - 13006 mRNA_4638 0.86 -1.1
664,805 - -0.3
664,816 + -3.2
664,826 + -1.3
664,898 - 0.2
664,932 - -3.3
664,949 - -1.3
664,974 - -3.1
665,006 + -3.6
665,069 - 0.3
665,091 - -1.2
665,333 + 13007 mRNA_4639 0.22 -0.2
665,367 - 13007 mRNA_4639 0.25 -3.3
665,371 - 13007 mRNA_4639 0.25 -0.4
665,394 - 13007 mRNA_4639 0.27 -2.2
665,405 - 13007 mRNA_4639 0.27 -3.8
665,409 + 13007 mRNA_4639 0.28 -0.3
665,559 + 13007 mRNA_4639 0.38 -0.5
665,845 - 13007 mRNA_4639 0.57 -2.7