Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4608

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4607: 12975 - BLAST TrfA domain protein, putative [Rhizoctonia solani AG-..., at 571268 to 571973 12975 mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572565 to 575380 12976 mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575731 to 577281 12977

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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571,680 + 12975 mRNA_4607 0.58 1.2
571,924 - -3.2
572,085 + -0.9
572,100 + -0.4
572,113 - 0.4
572,118 - -1.8
572,151 + -2.3
572,179 + -1.5
572,269 + -1.0
572,593 - -1.0
572,830 - -4.1
573,320 + 12976 mRNA_4608 0.27 1.2
574,297 - 12976 mRNA_4608 0.62 -2.0
574,840 - 12976 mRNA_4608 0.81 -0.9
575,011 + 12976 mRNA_4608 0.87 0.1
575,174 - -2.7
575,193 + -2.7
575,483 - 0.3
575,504 - -3.4
575,510 - -1.5
575,511 + -1.4
575,516 - -0.3
575,519 - -2.8
575,520 - 0.7
575,521 + -1.4
575,538 - -1.8
575,553 - -2.1
575,559 + -1.1
575,562 - -0.4
575,611 - -0.7
575,613 + -0.6
575,616 + -1.7
575,617 - -1.0
575,629 + -0.9
575,636 - -0.3
575,640 - -0.6
575,643 + 0.6
575,643 + -1.9
575,646 - -1.2
575,651 + -1.4
575,656 + -1.8
575,657 + -4.0
575,666 + -0.9
575,687 - -0.2
575,689 + -3.1
575,753 - -0.5
575,908 + 12977 mRNA_4609 0.11 -0.6
575,912 + 12977 mRNA_4609 0.12 -1.5
575,915 - 12977 mRNA_4609 0.12 -0.2
575,922 - 12977 mRNA_4609 0.12 -1.8
575,941 - 12977 mRNA_4609 0.14 -1.4
575,948 + 12977 mRNA_4609 0.14 -0.2