Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4603

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4602: 12970 - HMMPfam-NYN domain-PF01936, at 561866 to 562949 12970 mRNA_4603: 12971 - K07119 K07119 uncharacterized protein, at 563356 to 565108 12971 mRNA_4604: 12972 - K10747 LIG1 DNA ligase 1, at 565709 to 567987 12972

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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562,571 - 12970 mRNA_4602 0.65 -1.7
562,709 + 12970 mRNA_4602 0.78 -1.2
562,733 + 12970 mRNA_4602 0.80 -1.0
562,831 + 12970 mRNA_4602 0.89 -1.6
562,857 + 0.5
562,865 + -0.5
562,870 + -2.0
562,871 + 1.1
563,143 - -2.5
563,151 + -1.4
563,160 + -1.4
563,180 + -1.0
563,326 - -1.6
563,464 - -1.2
564,002 + 12971 mRNA_4603 0.37 -2.4
564,033 + 12971 mRNA_4603 0.39 -0.4
564,050 + 12971 mRNA_4603 0.40 -0.9
564,182 + 12971 mRNA_4603 0.47 -1.5
564,195 + 12971 mRNA_4603 0.48 -1.4
564,624 - 12971 mRNA_4603 0.72 -0.9
564,626 - 12971 mRNA_4603 0.72 -3.3
564,635 + 12971 mRNA_4603 0.73 -2.4
564,751 - 12971 mRNA_4603 0.80 -0.7
564,871 + 12971 mRNA_4603 0.86 -0.8
564,925 + 12971 mRNA_4603 0.90 -2.5
564,925 + 12971 mRNA_4603 0.90 -2.8
565,045 - -2.1
565,049 + -1.9
565,054 - -1.0
565,063 + -2.4
565,196 - -4.1
565,197 - -2.8
565,232 + 1.0
565,250 + 0.2
565,255 + -2.4
565,276 - -0.1
565,282 + -0.7
565,285 + 1.2
565,288 - -0.8
565,298 + -0.1
565,315 + -2.1
565,324 + -3.1
565,329 + 0.3
565,334 - -0.3
565,337 - 0.7
565,362 + -2.9
565,371 + -2.2
565,373 - -2.9
565,377 - -2.4
565,396 + -1.0
565,405 - 1.7
565,466 - -2.7
565,473 + -2.4
565,481 - -2.0
565,482 - -1.8
565,487 + -0.8
565,491 - 0.0
565,502 - -1.1
565,504 - -2.2
565,506 + -0.3
565,508 - -2.1
565,513 + -1.0
565,518 + -1.6
565,522 + 0.7
565,528 + -2.7
565,534 + 0.4
565,535 - -2.3
565,541 - -2.1
565,549 + -3.3
565,551 - -0.5
565,555 + 0.4
565,592 - -1.0
565,600 + -2.7
565,600 - -1.2
565,603 - -1.7
565,615 - -0.3
565,617 + 0.1
565,641 + -1.1
565,644 + -0.7
565,728 + -0.8
565,755 + 0.2