Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4582

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4581: 12949 - K17964 LRPPRC leucine-rich PPR motif-containing protein, mitochondrial, at 513749 to 516613 12949 mRNA_4582: 12950 - KOG2450 Aldehyde dehydrogenase, at 517111 to 519102 12950 mRNA_4583: 12951 - Hypothetical Protein, at 519562 to 522262 12951

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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516,669 + -1.2
516,744 + -1.1
516,760 + 0.8
516,879 + -0.5
516,896 + -1.6
516,897 + -1.1
516,902 + -1.6
516,984 - 0.0
516,988 - -0.6
516,990 + -2.6
517,023 + -1.0
517,029 + -1.9
517,045 - 0.7
517,061 + -0.6
517,067 + -0.1
517,210 + -2.5
517,328 - 12950 mRNA_4582 0.11 -0.1
517,339 - 12950 mRNA_4582 0.11 -1.1
517,364 - 12950 mRNA_4582 0.13 0.3
517,479 - 12950 mRNA_4582 0.18 1.2
517,485 - 12950 mRNA_4582 0.19 -2.0
517,654 - 12950 mRNA_4582 0.27 -1.3
517,793 + 12950 mRNA_4582 0.34 -1.8
517,967 - 12950 mRNA_4582 0.43 -1.1
518,066 + 12950 mRNA_4582 0.48 -0.4
518,350 - 12950 mRNA_4582 0.62 -0.8
518,789 + 12950 mRNA_4582 0.84 -0.8
518,897 - 12950 mRNA_4582 0.90 -1.5
519,103 + -0.4
519,106 - -0.5
519,287 + -1.9
519,348 - -1.6
519,374 + -1.8
519,378 - -0.2
519,401 + -0.5
519,406 - -2.1
519,409 - -0.9
519,831 + -1.0
519,831 + -0.3
519,845 - 12951 mRNA_4583 0.10 -0.9
519,965 - 12951 mRNA_4583 0.15 0.4
519,971 + 12951 mRNA_4583 0.15 -1.9