Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4570

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489481 to 490955 12937 mRNA_4570: 12938 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 491173 to 492372 12938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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490,963 - -1.9
490,972 + -1.9
490,976 + -3.8
490,980 + -3.0
490,983 - -0.8
490,990 + 0.0
491,029 + -1.6
491,030 - 0.1
491,040 + -2.4
491,041 - -1.6
491,133 - -0.7
491,145 + -2.2
491,150 - -0.9
491,181 + -2.7
491,193 + -0.5
491,199 - -1.5
491,280 + -1.1
491,314 + 12938 mRNA_4570 0.12 0.8
491,318 - 12938 mRNA_4570 0.12 -1.1
491,442 - 12938 mRNA_4570 0.22 -0.4
491,453 - 12938 mRNA_4570 0.23 0.5
491,542 - 12938 mRNA_4570 0.31 0.6
491,568 - 12938 mRNA_4570 0.33 -2.5
491,807 - 12938 mRNA_4570 0.53 -0.8
491,824 + 12938 mRNA_4570 0.54 0.6
491,977 - 12938 mRNA_4570 0.67 -2.7
491,987 - 12938 mRNA_4570 0.68 1.3
491,991 + 12938 mRNA_4570 0.68 -1.6
492,152 + 12938 mRNA_4570 0.82 1.7
492,262 + -0.1
492,286 + -2.0
492,298 + -1.0
492,316 + -0.9
492,426 - 0.2
492,438 - -2.5
492,449 - -0.5
492,459 + 0.5
492,569 + 0.5
492,576 + -0.8
492,581 - -1.6
492,587 - -0.7
492,591 - -2.2
492,598 - -0.1
492,604 - -0.0
492,610 + -2.1
492,611 + -0.2
492,612 + -1.2
492,707 - -3.7
492,717 - -1.8
492,726 + -0.0
492,726 - -3.2
492,726 + -3.0
492,728 + 0.1
492,740 + -0.7
492,748 - -1.9
492,748 + -1.8
492,753 + -1.9
492,754 + -0.3
492,758 - -1.9
492,776 - -3.0
492,777 - -1.5
492,783 - -2.2
492,799 - 0.1
492,799 + -0.4
492,800 - 0.4
492,803 - -1.9
492,831 - -0.8
492,832 - 0.5
492,841 + -0.1
492,849 - 0.3
492,853 + -4.5
492,859 - -0.1
492,863 + -0.4
492,863 + -0.8
492,872 + -2.7
492,873 + 1.9
492,873 - 2.2
492,875 + -0.3
492,884 - -1.2
492,886 - -2.7
492,889 - -2.5
492,898 - -0.1
492,907 + -1.0
492,919 - -0.8
492,919 - -1.6
492,947 - -1.7
492,947 + -2.2
492,949 - -0.1
492,954 + -0.1
492,960 - -0.2
492,994 - -1.2
493,025 + -1.0
493,089 + 0.0
493,166 - -1.6