Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4569

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4568: 12936 - Hypothetical Protein, at 485805 to 489325 12936 mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489481 to 490955 12937 mRNA_4570: 12938 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 491173 to 492372 12938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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488,525 + 12936 mRNA_4568 0.77 -1.1
488,662 + 12936 mRNA_4568 0.81 -2.1
488,954 - 12936 mRNA_4568 0.89 -1.4
489,115 + -4.0
489,246 - -2.7
489,812 + 12937 mRNA_4569 0.22 -0.1
490,963 - -1.9
490,972 + -1.9
490,976 + -3.8
490,980 + -3.0
490,983 - -0.8
490,990 + 0.0
491,029 + -1.6
491,030 - 0.1
491,040 + -2.4
491,041 - -1.6
491,133 - -0.7
491,145 + -2.2
491,150 - -0.9
491,181 + -2.7
491,193 + -0.5
491,199 - -1.5
491,280 + -1.1
491,314 + 12938 mRNA_4570 0.12 0.8
491,318 - 12938 mRNA_4570 0.12 -1.1
491,442 - 12938 mRNA_4570 0.22 -0.4
491,453 - 12938 mRNA_4570 0.23 0.5
491,542 - 12938 mRNA_4570 0.31 0.6
491,568 - 12938 mRNA_4570 0.33 -2.5
491,807 - 12938 mRNA_4570 0.53 -0.8
491,824 + 12938 mRNA_4570 0.54 0.6